SMTL ID : 6ve7.1

The inner junction complex of Chlamydomonas reinhardtii doublet microtubule

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-24-1-24-2-4-4-mer

Ligands

24 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 20 residues within 4Å: Chain D: G.10, Q.11, A.12, Q.15, E.71, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228 Chain R: K.252 Ligands: MG.2 17 PLIP interactions: 16 interactions with chain D, 1 interactions with chain R Hydrogen bonds: D:Q.11, D:A.12, D:E.71, D:N.101, D:G.144, D:T.145, D:G.146, D:T.179, D:T.179, D:E.183, D:N.206, D:N.228, D:N.228 pi-Stacking: D:Y.224, D:Y.224 pi-Cation interactions: D:Y.224 Salt bridges: R:K.252 GTP.3: 20 residues within 4Å: Chain E: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, N.206, Y.224, L.227, N.228 Chain I: K.252 Ligands: MG.4 19 PLIP interactions: 17 interactions with chain E, 2 interactions with chain I Hydrogen bonds: E:Q.11, E:A.12, E:D.98, E:D.98, E:A.99, E:A.100, E:N.101, E:G.144, E:T.145, E:G.146, E:N.206, E:N.206, E:N.228, E:N.228 pi-Stacking: E:Y.224, E:Y.224 pi-Cation interactions: E:Y.224 Salt bridges: I:K.252, I:K.252 GTP.5: 21 residues within 4Å: Chain F: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Chain J: K.252 Ligands: MG.6 19 PLIP interactions: 17 interactions with chain F, 2 interactions with chain J Hydrogen bonds: F:Q.11, F:A.12, F:D.98, F:A.99, F:A.100, F:N.101, F:G.144, F:T.145, F:G.146, F:T.179, F:T.179, F:N.206, F:N.206, F:N.228 pi-Stacking: F:Y.224, F:Y.224 pi-Cation interactions: F:Y.224 Salt bridges: J:K.252, J:K.252 GTP.7: 21 residues within 4Å: Chain G: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Ligands: MG.8 Chain z: K.252 20 PLIP interactions: 18 interactions with chain G, 2 interactions with chain z Hydrogen bonds: G:Q.11, G:A.12, G:E.71, G:A.99, G:A.100, G:N.101, G:G.144, G:T.145, G:G.146, G:T.179, G:T.179, G:N.206, G:N.206, G:N.206, G:N.228 pi-Stacking: G:Y.224, G:Y.224 pi-Cation interactions: G:Y.224 Salt bridges: z:K.252, z:K.252 GTP.13: 19 residues within 4Å: Chain K: K.252 Chain L: G.10, Q.11, A.12, Q.15, E.71, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, N.228 Ligands: MG.14 18 PLIP interactions: 15 interactions with chain L, 3 interactions with chain K Hydrogen bonds: L:Q.11, L:A.12, L:A.99, L:A.100, L:N.101, L:G.144, L:T.145, L:G.146, L:N.206, L:N.206, L:N.228, L:N.228 pi-Stacking: L:Y.224, L:Y.224 pi-Cation interactions: L:Y.224 Salt bridges: K:K.252, K:K.252, K:K.252 GTP.15: 20 residues within 4Å: Chain M: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, N.228 Chain T: K.252 Ligands: MG.16 18 PLIP interactions: 17 interactions with chain M, 1 interactions with chain T Hydrogen bonds: M:Q.11, M:A.12, M:D.98, M:A.100, M:N.101, M:G.144, M:T.145, M:T.145, M:T.145, M:G.146, M:T.179, M:T.179, M:N.206, M:N.206, M:N.228, M:N.228 pi-Cation interactions: M:Y.224 Salt bridges: T:K.252 GTP.19: 20 residues within 4Å: Chain O: K.252 Chain P: G.10, Q.11, A.12, Q.15, E.71, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228 Ligands: MG.20 20 PLIP interactions: 18 interactions with chain P, 2 interactions with chain O Hydrogen bonds: P:Q.11, P:A.12, P:E.71, P:A.99, P:A.100, P:N.101, P:G.144, P:T.145, P:G.146, P:T.179, P:T.179, P:E.183, P:N.206, P:N.228, P:N.228 pi-Stacking: P:Y.224, P:Y.224 pi-Cation interactions: P:Y.224 Salt bridges: O:K.252, O:K.252 GTP.23: 19 residues within 4Å: Chain Q: K.252 Chain S: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, N.228 Ligands: MG.24 21 PLIP interactions: 18 interactions with chain S, 3 interactions with chain Q Hydrogen bonds: S:Q.11, S:A.12, S:D.98, S:A.100, S:N.101, S:G.143, S:G.144, S:T.145, S:T.145, S:G.146, S:S.147, S:T.179, S:T.179, S:N.206, S:N.206, S:N.228, S:N.228 pi-Cation interactions: S:Y.224 Salt bridges: Q:K.252, Q:K.252, Q:K.252 GTP.29: 20 residues within 4Å: Chain 8: K.252 Chain X: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Ligands: MG.30 17 PLIP interactions: 16 interactions with chain X, 1 interactions with chain 8 Hydrogen bonds: X:Q.11, X:A.12, X:E.71, X:A.99, X:A.100, X:N.101, X:G.144, X:T.145, X:G.146, X:T.179, X:T.179, X:N.206, X:N.206, X:N.228, X:N.228 pi-Cation interactions: X:Y.224 Salt bridges: 8:K.252 GTP.31: 22 residues within 4Å: Chain 1: Q.245, K.252 Chain Y: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, S.147, T.179, N.206, Y.224, L.227, N.228 Ligands: MG.32 20 PLIP interactions: 18 interactions with chain Y, 2 interactions with chain 1 Hydrogen bonds: Y:Q.11, Y:Q.11, Y:A.12, Y:A.99, Y:A.100, Y:N.101, Y:G.144, Y:T.145, Y:G.146, Y:S.147, Y:T.179, Y:N.206, Y:N.206, Y:N.206, Y:Y.224, Y:N.228 pi-Stacking: Y:Y.224, Y:Y.224 Salt bridges: 1:K.252, 1:K.252 GTP.33: 20 residues within 4Å: Chain 9: K.252 Chain Z: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Ligands: MG.34 15 PLIP interactions: 14 interactions with chain Z, 1 interactions with chain 9 Hydrogen bonds: Z:Q.11, Z:A.12, Z:E.71, Z:A.99, Z:A.100, Z:N.101, Z:G.144, Z:T.145, Z:G.146, Z:T.179, Z:N.206, Z:N.206, Z:N.228 pi-Cation interactions: Z:Y.224 Salt bridges: 9:K.252 GTP.39: 20 residues within 4Å: Chain 4: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Chain V: K.252 Ligands: MG.40 20 PLIP interactions: 18 interactions with chain 4, 2 interactions with chain V Hydrogen bonds: 4:Q.11, 4:A.12, 4:E.71, 4:A.99, 4:A.100, 4:N.101, 4:G.144, 4:T.145, 4:T.145, 4:G.146, 4:T.179, 4:T.179, 4:N.206, 4:N.228, 4:N.228 pi-Stacking: 4:Y.224, 4:Y.224 pi-Cation interactions: 4:Y.224 Salt bridges: V:K.252, V:K.252 GTP.41: 20 residues within 4Å: Chain 5: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Chain N: K.252 Ligands: MG.42 19 PLIP interactions: 3 interactions with chain N, 16 interactions with chain 5 Salt bridges: N:K.252, N:K.252, N:K.252 Hydrogen bonds: 5:Q.11, 5:A.12, 5:E.71, 5:A.99, 5:A.100, 5:N.101, 5:G.144, 5:T.145, 5:G.146, 5:T.179, 5:T.179, 5:N.206, 5:N.228, 5:N.228 pi-Stacking: 5:Y.224, 5:Y.224 GTP.43: 20 residues within 4Å: Chain 7: G.10, Q.11, A.12, Q.15, E.71, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Ligands: MG.44 Chain y: K.252 21 PLIP interactions: 18 interactions with chain 7, 3 interactions with chain y Hydrogen bonds: 7:Q.11, 7:A.12, 7:E.71, 7:E.71, 7:A.99, 7:N.101, 7:G.144, 7:T.145, 7:G.146, 7:T.179, 7:T.179, 7:N.206, 7:N.206, 7:N.228, 7:N.228 pi-Stacking: 7:Y.224, 7:Y.224 pi-Cation interactions: 7:Y.224 Salt bridges: y:K.252, y:K.252, y:K.252 GTP.49: 21 residues within 4Å: Chain U: K.252 Ligands: MG.50 Chain a: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 20 PLIP interactions: 17 interactions with chain a, 3 interactions with chain U Hydrogen bonds: a:Q.11, a:A.12, a:E.71, a:A.99, a:N.101, a:G.144, a:T.145, a:G.146, a:T.179, a:T.179, a:N.206, a:N.206, a:Y.224, a:N.228, a:N.228 pi-Stacking: a:Y.224, a:Y.224 Salt bridges: U:K.252, U:K.252, U:K.252 GTP.51: 20 residues within 4Å: Ligands: MG.52 Chain c: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Chain g: K.252 20 PLIP interactions: 18 interactions with chain c, 2 interactions with chain g Hydrogen bonds: c:Q.11, c:A.12, c:E.71, c:D.98, c:A.100, c:N.101, c:G.144, c:T.145, c:G.146, c:T.179, c:T.179, c:N.206, c:N.206, c:N.228, c:N.228 pi-Stacking: c:Y.224, c:Y.224 pi-Cation interactions: c:Y.224 Salt bridges: g:K.252, g:K.252 GTP.53: 21 residues within 4Å: Ligands: MG.54 Chain e: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 Chain j: K.252 20 PLIP interactions: 17 interactions with chain e, 3 interactions with chain j Hydrogen bonds: e:Q.11, e:A.12, e:D.98, e:A.100, e:N.101, e:G.144, e:T.145, e:G.146, e:T.179, e:T.179, e:N.206, e:N.206, e:N.228, e:N.228 pi-Stacking: e:Y.224, e:Y.224 pi-Cation interactions: e:Y.224 Salt bridges: j:K.252, j:K.252, j:K.252 GTP.62: 22 residues within 4Å: Chain 0: Q.245, K.252 Ligands: MG.63 Chain i: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 18 PLIP interactions: 16 interactions with chain i, 2 interactions with chain 0 Hydrogen bonds: i:Q.11, i:A.12, i:D.98, i:A.100, i:N.101, i:G.144, i:T.145, i:G.146, i:T.179, i:T.179, i:N.206, i:N.228, i:N.228 pi-Stacking: i:Y.224, i:Y.224 pi-Cation interactions: i:Y.224 Salt bridges: 0:K.252, 0:K.252 GTP.72: 21 residues within 4Å: Ligands: MG.57 Chain f: K.252 Chain o: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 22 PLIP interactions: 19 interactions with chain o, 3 interactions with chain f Hydrogen bonds: o:Q.11, o:A.12, o:D.98, o:D.98, o:A.100, o:N.101, o:G.144, o:T.145, o:G.146, o:T.179, o:T.179, o:E.183, o:N.206, o:N.206, o:N.228, o:N.228 pi-Stacking: o:Y.224, o:Y.224 pi-Cation interactions: o:Y.224 Salt bridges: f:K.252, f:K.252, f:K.252 GTP.73: 20 residues within 4Å: Ligands: MG.74 Chain h: K.252 Chain q: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 22 PLIP interactions: 19 interactions with chain q, 3 interactions with chain h Hydrogen bonds: q:Q.11, q:A.12, q:E.71, q:D.98, q:A.99, q:A.100, q:N.101, q:G.144, q:T.145, q:G.146, q:T.179, q:T.179, q:N.206, q:N.206, q:N.228, q:N.228 pi-Stacking: q:Y.224, q:Y.224 pi-Cation interactions: q:Y.224 Salt bridges: h:K.252, h:K.252, h:K.252 GTP.75: 20 residues within 4Å: Ligands: MG.76 Chain l: K.252 Chain r: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 21 PLIP interactions: 19 interactions with chain r, 2 interactions with chain l Hydrogen bonds: r:Q.11, r:A.12, r:E.71, r:E.71, r:D.98, r:A.99, r:A.100, r:N.101, r:G.144, r:T.145, r:G.146, r:T.179, r:T.179, r:N.206, r:N.228, r:N.228 pi-Stacking: r:Y.224, r:Y.224 pi-Cation interactions: r:Y.224 Salt bridges: l:K.252, l:K.252 GTP.79: 19 residues within 4Å: Ligands: MG.80 Chain k: K.252 Chain v: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, N.206, Y.224, L.227, N.228 17 PLIP interactions: 16 interactions with chain v, 1 interactions with chain k Hydrogen bonds: v:Q.11, v:A.12, v:E.71, v:E.71, v:A.99, v:A.100, v:N.101, v:G.144, v:T.145, v:G.146, v:N.206, v:N.206, v:N.228 pi-Stacking: v:Y.224, v:Y.224 pi-Cation interactions: v:Y.224 Salt bridges: k:K.252 GTP.81: 21 residues within 4Å: Ligands: MG.82 Chain u: K.252 Chain w: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, A.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, L.227, N.228 20 PLIP interactions: 17 interactions with chain w, 3 interactions with chain u Hydrogen bonds: w:Q.11, w:A.12, w:E.71, w:E.71, w:A.99, w:A.100, w:N.101, w:G.144, w:T.145, w:G.146, w:T.179, w:N.206, w:N.228, w:N.228 pi-Stacking: w:Y.224, w:Y.224 pi-Cation interactions: w:Y.224 Salt bridges: u:K.252, u:K.252, u:K.252 GTP.83: 20 residues within 4Å: Ligands: MG.84 Chain m: L.246, K.252 Chain x: G.10, Q.11, A.12, Q.15, E.71, D.98, A.99, A.100, N.101, G.143, G.144, T.145, G.146, N.206, Y.224, L.227, N.228 18 PLIP interactions: 17 interactions with chain x, 1 interactions with chain m Hydrogen bonds: x:Q.11, x:A.12, x:E.71, x:D.98, x:A.99, x:A.100, x:N.101, x:G.144, x:T.145, x:G.146, x:N.206, x:N.206, x:N.228, x:N.228 pi-Stacking: x:Y.224, x:Y.224 pi-Cation interactions: x:Y.224 Salt bridges: m:K.252

24 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain D: E.71 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain E: E.71 Chain I: K.252 Ligands: GTP.3 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain F: E.71 Chain J: K.252 Ligands: GTP.5 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.71 MG.8: 3 residues within 4Å: Chain G: E.71 Ligands: GTP.7 Chain z: K.252 No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain K: K.252 Chain L: E.71 Ligands: GTP.13 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain M: E.71 Chain T: K.252 Ligands: GTP.15 No protein-ligand interaction detected (PLIP) MG.20: 3 residues within 4Å: Chain O: K.252 Chain P: E.71 Ligands: GTP.19 No protein-ligand interaction detected (PLIP) MG.24: 2 residues within 4Å: Chain Q: K.252 Ligands: GTP.23 No protein-ligand interaction detected (PLIP) MG.30: 2 residues within 4Å: Chain X: E.71 Ligands: GTP.29 1 PLIP interactions: 1 interactions with chain X Metal complexes: X:E.71 MG.32: 3 residues within 4Å: Chain 1: K.252 Chain Y: E.71 Ligands: GTP.31 1 PLIP interactions: 1 interactions with chain Y Metal complexes: Y:E.71 MG.34: 2 residues within 4Å: Chain Z: E.71 Ligands: GTP.33 1 PLIP interactions: 1 interactions with chain Z Metal complexes: Z:E.71 MG.40: 4 residues within 4Å: Chain 4: Q.11, E.71 Chain V: K.252 Ligands: GTP.39 1 PLIP interactions: 1 interactions with chain 4 Metal complexes: 4:E.71 MG.42: 3 residues within 4Å: Chain 5: E.71 Chain N: K.252 Ligands: GTP.41 No protein-ligand interaction detected (PLIP) MG.44: 3 residues within 4Å: Chain 7: E.71 Ligands: GTP.43 Chain y: K.252 1 PLIP interactions: 1 interactions with chain 7 Metal complexes: 7:E.71 MG.50: 3 residues within 4Å: Chain U: K.252 Ligands: GTP.49 Chain a: E.71 1 PLIP interactions: 1 interactions with chain a Metal complexes: a:E.71 MG.52: 3 residues within 4Å: Ligands: GTP.51 Chain c: E.71 Chain g: K.252 No protein-ligand interaction detected (PLIP) MG.54: 3 residues within 4Å: Ligands: GTP.53 Chain e: E.71 Chain j: K.252 No protein-ligand interaction detected (PLIP) MG.57: 3 residues within 4Å: Ligands: GTP.72 Chain f: K.252 Chain o: E.71 No protein-ligand interaction detected (PLIP) MG.63: 3 residues within 4Å: Chain 0: K.252 Ligands: GTP.62 Chain i: E.71 1 PLIP interactions: 1 interactions with chain i Metal complexes: i:E.71 MG.74: 3 residues within 4Å: Ligands: GTP.73 Chain h: K.252 Chain q: E.71 No protein-ligand interaction detected (PLIP) MG.76: 3 residues within 4Å: Ligands: GTP.75 Chain l: K.252 Chain r: E.71 1 PLIP interactions: 1 interactions with chain r Metal complexes: r:E.71 MG.80: 3 residues within 4Å: Ligands: GTP.79 Chain k: K.252 Chain v: E.71 No protein-ligand interaction detected (PLIP) MG.82: 3 residues within 4Å: Ligands: GTP.81 Chain u: K.252 Chain w: E.71 1 PLIP interactions: 1 interactions with chain w Metal complexes: w:E.71 MG.84: 2 residues within 4Å: Ligands: GTP.83 Chain x: E.71 1 PLIP interactions: 1 interactions with chain x Metal complexes: x:E.71

24 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.9: 13 residues within 4Å: Chain I: Q.11, C.12, Q.15, N.99, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 16 PLIP interactions: 16 interactions with chain I Hydrogen bonds: I:Q.11, I:Q.11, I:C.12, I:G.141, I:G.142, I:T.143, I:T.143, I:T.143, I:G.144, I:D.177, I:N.204, I:N.204, I:N.226, I:N.226 pi-Stacking: I:F.222, I:F.222 GDP.10: 16 residues within 4Å: Chain J: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 16 PLIP interactions: 16 interactions with chain J Hydrogen bonds: J:Q.11, J:Q.11, J:C.12, J:S.138, J:G.141, J:G.142, J:T.143, J:T.143, J:T.143, J:G.144, J:D.177, J:N.204, J:N.226, J:N.226 pi-Stacking: J:F.222, J:F.222 GDP.12: 14 residues within 4Å: Chain K: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, N.226 Chain S: L.248 17 PLIP interactions: 17 interactions with chain K Hydrogen bonds: K:Q.11, K:Q.11, K:C.12, K:S.138, K:G.141, K:G.142, K:T.143, K:T.143, K:T.143, K:G.144, K:D.177, K:N.204, K:N.204, K:N.226, K:N.226 pi-Stacking: K:F.222, K:F.222 GDP.17: 12 residues within 4Å: Chain N: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, F.222, N.226 13 PLIP interactions: 13 interactions with chain N Hydrogen bonds: N:Q.11, N:Q.11, N:C.12, N:S.138, N:G.141, N:G.142, N:T.143, N:T.143, N:T.143, N:G.144, N:D.177, N:N.204, N:N.226 GDP.18: 16 residues within 4Å: Chain O: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, F.222, N.226 Chain a: L.248 18 PLIP interactions: 18 interactions with chain O Hydrogen bonds: O:Q.11, O:Q.11, O:C.12, O:S.138, O:G.141, O:G.142, O:T.143, O:T.143, O:T.143, O:G.144, O:D.177, O:E.181, O:N.204, O:N.204, O:N.226, O:N.226 pi-Stacking: O:F.222, O:F.222 GDP.21: 14 residues within 4Å: Chain Q: G.10, Q.11, C.12, Q.15, D.67, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 13 PLIP interactions: 13 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:Q.11, Q:C.12, Q:G.141, Q:G.142, Q:T.143, Q:T.143, Q:T.143, Q:G.144, Q:D.177, Q:N.204, Q:N.204, Q:N.226 GDP.22: 15 residues within 4Å: Chain 5: L.248 Chain R: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, N.226 17 PLIP interactions: 17 interactions with chain R Hydrogen bonds: R:Q.11, R:Q.11, R:C.12, R:S.138, R:G.141, R:G.142, R:T.143, R:T.143, R:T.143, R:G.144, R:D.177, R:E.181, R:N.204, R:N.226, R:N.226 pi-Stacking: R:F.222, R:F.222 GDP.25: 15 residues within 4Å: Chain T: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 16 PLIP interactions: 16 interactions with chain T Hydrogen bonds: T:Q.11, T:Q.11, T:C.12, T:S.138, T:G.141, T:G.142, T:T.143, T:T.143, T:T.143, T:G.144, T:D.177, T:N.204, T:N.226, T:N.226 pi-Stacking: T:F.222, T:F.222 GDP.26: 15 residues within 4Å: Chain U: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, F.222, L.225, N.226 15 PLIP interactions: 15 interactions with chain U Hydrogen bonds: U:Q.11, U:Q.11, U:C.12, U:S.138, U:G.141, U:G.142, U:T.143, U:T.143, U:T.143, U:G.144, U:D.177, U:E.181, U:N.204, U:N.226, U:N.226 GDP.27: 15 residues within 4Å: Chain V: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, N.226 13 PLIP interactions: 13 interactions with chain V Hydrogen bonds: V:Q.11, V:Q.11, V:C.12, V:S.138, V:G.141, V:G.142, V:T.143, V:T.143, V:T.143, V:G.144, V:N.204, V:N.226, V:N.226 GDP.35: 14 residues within 4Å: Chain 0: Q.11, C.12, Q.15, I.16, N.99, S.138, G.141, G.142, T.143, G.144, D.177, F.222, L.225, N.226 13 PLIP interactions: 13 interactions with chain 0 Hydrogen bonds: 0:Q.11, 0:Q.11, 0:C.12, 0:S.138, 0:G.141, 0:G.142, 0:T.143, 0:T.143, 0:T.143, 0:G.144, 0:D.177, 0:N.226, 0:N.226 GDP.37: 16 residues within 4Å: Chain 1: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 14 PLIP interactions: 14 interactions with chain 1 Hydrogen bonds: 1:Q.11, 1:Q.11, 1:C.12, 1:S.138, 1:G.141, 1:G.142, 1:T.143, 1:T.143, 1:T.143, 1:G.144, 1:D.177, 1:N.204, 1:N.226, 1:N.226 GDP.45: 16 residues within 4Å: Chain 8: Q.11, C.12, Q.15, I.16, A.97, N.99, G.141, G.142, T.143, G.144, D.177, E.181, N.204, F.222, L.225, N.226 17 PLIP interactions: 17 interactions with chain 8 Hydrogen bonds: 8:Q.11, 8:Q.11, 8:C.12, 8:N.99, 8:G.141, 8:G.142, 8:T.143, 8:T.143, 8:T.143, 8:G.144, 8:D.177, 8:E.181, 8:N.204, 8:N.226, 8:N.226 pi-Stacking: 8:F.222, 8:F.222 GDP.47: 14 residues within 4Å: Chain 9: Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, F.222, L.225, N.226 13 PLIP interactions: 13 interactions with chain 9 Hydrogen bonds: 9:Q.11, 9:Q.11, 9:C.12, 9:S.138, 9:G.141, 9:G.142, 9:T.143, 9:T.143, 9:T.143, 9:G.144, 9:D.177, 9:N.226, 9:N.226 GDP.55: 16 residues within 4Å: Chain f: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 16 PLIP interactions: 16 interactions with chain f Hydrogen bonds: f:Q.11, f:Q.11, f:C.12, f:S.138, f:G.141, f:G.142, f:T.143, f:T.143, f:T.143, f:G.144, f:D.177, f:N.204, f:N.226, f:N.226 pi-Stacking: f:F.222, f:F.222 GDP.58: 16 residues within 4Å: Chain e: L.248 Chain g: Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 17 PLIP interactions: 17 interactions with chain g Hydrogen bonds: g:Q.11, g:Q.11, g:C.12, g:S.138, g:G.141, g:G.142, g:T.143, g:T.143, g:T.143, g:G.144, g:D.177, g:N.204, g:N.204, g:N.204, g:N.226 pi-Stacking: g:F.222 pi-Cation interactions: g:F.222 GDP.60: 17 residues within 4Å: Chain h: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 Chain o: L.248 17 PLIP interactions: 17 interactions with chain h Hydrogen bonds: h:Q.11, h:Q.11, h:C.12, h:S.138, h:G.141, h:G.142, h:T.143, h:T.143, h:T.143, h:G.144, h:D.177, h:N.204, h:N.204, h:N.204, h:N.226 pi-Stacking: h:F.222 pi-Cation interactions: h:F.222 GDP.64: 14 residues within 4Å: Chain j: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 14 PLIP interactions: 14 interactions with chain j Hydrogen bonds: j:Q.11, j:Q.11, j:C.12, j:S.138, j:G.141, j:G.142, j:T.143, j:T.143, j:T.143, j:G.144, j:D.177, j:N.204, j:N.226, j:N.226 GDP.66: 18 residues within 4Å: Chain X: L.248, E.254 Chain k: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 18 PLIP interactions: 18 interactions with chain k Hydrogen bonds: k:Q.11, k:Q.11, k:Q.11, k:C.12, k:S.138, k:G.141, k:G.142, k:T.143, k:T.143, k:T.143, k:G.144, k:D.177, k:E.181, k:N.204, k:N.226, k:N.226 pi-Stacking: k:F.222, k:F.222 GDP.68: 17 residues within 4Å: Chain Y: L.248, E.254 Chain l: G.10, Q.11, C.12, Q.15, A.97, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 17 PLIP interactions: 17 interactions with chain l Hydrogen bonds: l:Q.11, l:Q.11, l:Q.11, l:C.12, l:S.138, l:G.141, l:G.142, l:T.143, l:T.143, l:T.143, l:G.144, l:D.177, l:N.204, l:N.204, l:N.226, l:N.226 pi-Cation interactions: l:F.222 GDP.70: 16 residues within 4Å: Chain m: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, E.181, F.222, L.225, N.226 16 PLIP interactions: 16 interactions with chain m Hydrogen bonds: m:Q.11, m:Q.11, m:C.12, m:S.138, m:G.141, m:G.142, m:T.143, m:T.143, m:T.143, m:G.144, m:D.177, m:E.181, m:N.226, m:N.226 pi-Stacking: m:F.222, m:F.222 GDP.77: 16 residues within 4Å: Chain u: G.10, Q.11, C.12, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, F.222, L.225, N.226 15 PLIP interactions: 15 interactions with chain u Hydrogen bonds: u:Q.11, u:Q.11, u:C.12, u:S.138, u:G.141, u:G.142, u:T.143, u:T.143, u:T.143, u:G.144, u:D.177, u:N.226, u:N.226 pi-Stacking: u:F.222, u:F.222 GDP.85: 17 residues within 4Å: Chain F: L.248 Chain y: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 17 PLIP interactions: 17 interactions with chain y Hydrogen bonds: y:Q.11, y:Q.11, y:C.12, y:S.138, y:G.141, y:G.142, y:T.143, y:T.143, y:T.143, y:G.144, y:D.177, y:N.204, y:N.226, y:N.226 pi-Stacking: y:F.222, y:F.222 pi-Cation interactions: y:F.222 GDP.87: 17 residues within 4Å: Chain i: L.248, E.254 Chain z: G.10, Q.11, C.12, Q.15, A.97, S.138, G.141, G.142, T.143, G.144, D.177, N.204, F.222, L.225, N.226 18 PLIP interactions: 18 interactions with chain z Hydrogen bonds: z:Q.11, z:Q.11, z:Q.11, z:C.12, z:S.138, z:G.141, z:G.142, z:T.143, z:T.143, z:T.143, z:G.144, z:D.177, z:N.204, z:N.226, z:N.226 pi-Stacking: z:F.222, z:F.222 pi-Cation interactions: z:F.222

16 x TA1: TAXOL(Non-covalent)

TA1.11: 17 residues within 4Å: Chain J: V.23, D.26, E.27, L.215, H.227, L.228, A.231, S.234, P.272, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 11 PLIP interactions: 11 interactions with chain J Hydrophobic interactions: J:V.23, J:V.23, J:L.215, J:L.228, J:T.274, J:L.361 Hydrogen bonds: J:T.274, J:Q.279, J:K.359, J:G.360 pi-Cation interactions: J:H.227 TA1.28: 15 residues within 4Å: Chain V: V.23, D.26, E.27, L.215, H.227, L.228, A.231, S.234, P.272, T.274, Q.279, P.358, K.359, G.360, L.361 11 PLIP interactions: 11 interactions with chain V Hydrophobic interactions: V:V.23, V:V.23, V:D.26, V:L.228, V:A.231, V:T.274, V:L.361 Hydrogen bonds: V:T.274, V:K.359, V:G.360 pi-Cation interactions: V:H.227 TA1.36: 18 residues within 4Å: Chain 0: V.23, D.26, E.27, L.215, H.227, L.228, A.231, S.234, P.272, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 11 PLIP interactions: 11 interactions with chain 0 Hydrophobic interactions: 0:V.23, 0:D.26, 0:E.27, 0:L.215, 0:L.228, 0:T.274, 0:L.361 Hydrogen bonds: 0:T.274, 0:K.359, 0:G.360 Salt bridges: 0:R.276 TA1.38: 14 residues within 4Å: Chain 1: V.23, L.215, H.227, L.228, A.231, S.234, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 11 PLIP interactions: 11 interactions with chain 1 Hydrophobic interactions: 1:V.23, 1:V.23, 1:L.215, 1:L.228, 1:T.274, 1:L.361 Hydrogen bonds: 1:T.274, 1:K.359, 1:G.360 Salt bridges: 1:R.276 pi-Cation interactions: 1:H.227 TA1.46: 16 residues within 4Å: Chain 8: V.23, D.26, E.27, L.215, H.227, L.228, A.231, S.234, L.273, T.274, S.275, Q.279, P.358, K.359, G.360, L.361 9 PLIP interactions: 9 interactions with chain 8 Hydrophobic interactions: 8:V.23, 8:V.23, 8:L.215, 8:L.228, 8:L.361 Hydrogen bonds: 8:T.274, 8:K.359, 8:G.360 pi-Cation interactions: 8:H.227 TA1.48: 17 residues within 4Å: Chain 9: V.23, D.26, E.27, L.215, D.224, H.227, L.228, S.234, F.270, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 11 PLIP interactions: 11 interactions with chain 9 Hydrophobic interactions: 9:V.23, 9:V.23, 9:E.27, 9:L.215, 9:H.227, 9:L.228, 9:F.270 Hydrogen bonds: 9:T.274, 9:K.359, 9:G.360 Salt bridges: 9:R.276 TA1.56: 21 residues within 4Å: Chain f: E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, P.272, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 13 PLIP interactions: 13 interactions with chain f Hydrophobic interactions: f:V.23, f:D.26, f:L.215, f:L.217, f:L.228, f:T.274, f:L.361 Hydrogen bonds: f:T.274, f:Q.279, f:K.359, f:G.360 Salt bridges: f:R.276, f:K.359 TA1.59: 17 residues within 4Å: Chain g: V.23, D.26, L.215, H.227, L.228, A.231, S.234, P.272, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 9 PLIP interactions: 9 interactions with chain g Hydrophobic interactions: g:V.23, g:V.23, g:D.26, g:L.215, g:L.228, g:L.361 Hydrogen bonds: g:T.274, g:K.359, g:G.360 TA1.61: 19 residues within 4Å: Chain h: E.22, V.23, D.26, L.215, D.224, H.227, L.228, A.231, S.234, P.272, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 9 PLIP interactions: 9 interactions with chain h Hydrophobic interactions: h:V.23, h:V.23, h:L.215, h:L.228, h:A.231, h:L.361 Hydrogen bonds: h:T.274, h:K.359, h:G.360 TA1.65: 19 residues within 4Å: Chain j: E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 12 PLIP interactions: 12 interactions with chain j Hydrophobic interactions: j:V.23, j:D.26, j:E.27, j:L.217, j:L.228, j:A.231, j:T.274, j:L.361 Hydrogen bonds: j:T.274, j:Q.279, j:K.359, j:G.360 TA1.67: 17 residues within 4Å: Chain k: V.23, D.26, L.215, L.217, H.227, L.228, A.231, S.234, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 15 PLIP interactions: 15 interactions with chain k Hydrophobic interactions: k:V.23, k:V.23, k:L.217, k:L.228, k:A.231, k:K.359 Hydrogen bonds: k:T.274, k:Q.279, k:K.359, k:K.359, k:K.359, k:G.360 Salt bridges: k:R.276, k:K.359 pi-Cation interactions: k:K.359 TA1.69: 13 residues within 4Å: Chain l: V.23, L.215, H.227, L.228, A.231, S.234, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 13 PLIP interactions: 13 interactions with chain l Hydrophobic interactions: l:V.23, l:V.23, l:L.215, l:L.228, l:A.231, l:T.274, l:K.359 Hydrogen bonds: l:T.274, l:K.359, l:K.359, l:G.360 Salt bridges: l:R.276 pi-Cation interactions: l:H.227 TA1.71: 16 residues within 4Å: Chain m: V.23, D.26, E.27, L.215, H.227, L.228, S.234, L.273, T.274, S.275, R.276, Q.279, P.358, K.359, G.360, L.361 7 PLIP interactions: 7 interactions with chain m Hydrophobic interactions: m:V.23, m:V.23, m:L.228 Hydrogen bonds: m:T.274, m:K.359, m:G.360 Salt bridges: m:R.276 TA1.78: 16 residues within 4Å: Chain u: V.23, E.27, L.215, D.224, H.227, L.228, A.231, S.234, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 12 PLIP interactions: 12 interactions with chain u Hydrophobic interactions: u:V.23, u:V.23, u:E.27, u:L.215, u:L.228, u:A.231 Hydrogen bonds: u:E.27, u:T.274, u:Q.279, u:K.359, u:G.360 pi-Cation interactions: u:H.227 TA1.86: 19 residues within 4Å: Chain y: V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain y Hydrophobic interactions: y:V.23, y:D.26, y:L.217, y:D.224, y:L.228, y:F.270, y:T.274, y:P.358, y:L.361 Hydrogen bonds: y:T.274, y:Q.279, y:K.359, y:G.360 Salt bridges: y:R.276 TA1.88: 18 residues within 4Å: Chain z: V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, S.234, P.272, L.273, T.274, R.276, Q.279, P.358, K.359, G.360, L.361 13 PLIP interactions: 13 interactions with chain z Hydrophobic interactions: z:V.23, z:V.23, z:D.26, z:L.217, z:L.228, z:T.274, z:L.361 Hydrogen bonds: z:T.274, z:Q.279, z:K.359, z:G.360 Salt bridges: z:R.276 pi-Stacking: z:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khalifa, A.A.Z. et al., The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications. Elife (2020)

Release Date

2020-02-05

Peptides

Flagellar associated protein: A
FAP52: BC
Tubulin alpha: DEFGLMPSXYZ457aceioqrvwx
Protein Flattop homolog: H
Tubulin beta: IJKNOQRTUV0189fghjklmuyz
FAP276: Wn
Cilia- and flagella-associated protein 20: 26pt
PACRG: 3bds

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

L
L

M
M

P
P

S
S

X
X

Y
Y

Z
Z

4
e

5
f

7
h

a
k

c
m

e
o

i
s

o
y

q
0

r
1

v
5

w
6

x
7

H
H

I
I

J
J

K
K

N
N

O
O

Q
Q

R
R

T
T

U
U

V
V

0
a

1
b

8
i

9
j

f
p

g
q

h
r

j
t

k
u

l
v

m
w

u
4

y
8

z
9

W
W

n
x

2
c

6
g

p
z

t
3

3
d

b
l

d
n

s
2

Flagellar associated protein

FAP52

Tubulin alpha

Protein Flattop homolog

Tubulin beta

FAP276

Cilia- and flagella-associated protein 20

PACRG

Related Entries With Identical Sequence