SMTL ID : 6vgg.1

Crystal structure of the DNA binding domains of human transcription factor ERG, human Runx2 bound to core binding factor beta (Cbfb), and mithramycin, in complex with 16mer DNA CAGAGGATGTGGCTTC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.31 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x QWP: mithramycin(Non-covalent)(Non-functional Binders)

QWP.1: 9 residues within 4Å: Chain A: D.73 Chain B: G.5, G.6, A.7 Chain D: T.25, D.74, R.76 Ligands: MG.2, QWP.3 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.74, D:D.74, D:R.76 QWP.3: 8 residues within 4Å: Chain B: G.6 Chain C: C.11, C.12, T.13, C.14, T.15 Ligands: QWP.1, MG.2 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 3 residues within 4Å: Chain B: G.6 Ligands: QWP.1, QWP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, C. et al., Allosteric interference in oncogenic FLI1 and ERG transactions by mithramycins. Structure (2021)

Release Date

2020-11-25

Peptides

Transcriptional regulator ERG: A
Runt-related transcription factor 2: D
Core-binding factor subunit beta: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

E
G

Transcriptional regulator ERG

Runt-related transcription factor 2

Core-binding factor subunit beta

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