SMTL ID : 6vgn.1

ClpP1P2 complex from M. tuberculosis bound to ADEP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

7 x R0M- WFP- ALO- PRO- YCP- ALA- MP8: R0M-WFP-ALO-PRO-YCP-ALA-MP8(Non-covalent)

R0M-WFP-ALO-PRO-YCP-ALA-MP8.1: 16 residues within 4Å: Chain A: L.47, S.51, T.78, Y.81 Chain B: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.27, B:K.21, B:E.25, B:Y.61, B:L.91, B:L.113, A:Y.81, B:L.190 Hydrogen bonds: B:Y.61, B:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.2: 16 residues within 4Å: Chain A: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 Chain G: L.47, S.51, T.78, Y.81 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain G Hydrophobic interactions: A:I.27, A:K.21, A:E.25, G:Y.81, A:Y.61, A:L.91, A:L.113, A:L.190 Hydrogen bonds: A:Y.61, A:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.3: 16 residues within 4Å: Chain F: L.47, S.51, T.78, Y.81 Chain G: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:I.27, G:K.21, G:E.25, G:Y.61, G:L.91, G:L.113, F:Y.81, G:L.190 Hydrogen bonds: G:Y.61, G:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.4: 16 residues within 4Å: Chain E: L.47, S.51, T.78, Y.81 Chain F: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:I.27, F:K.21, F:E.25, E:Y.81, F:Y.61, F:L.91, F:L.113, F:L.190 Hydrogen bonds: F:Y.61, F:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.5: 16 residues within 4Å: Chain D: L.47, S.51, T.78, Y.81 Chain E: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:I.27, E:K.21, E:E.25, D:Y.81, E:Y.61, E:L.91, E:L.113, E:L.190 Hydrogen bonds: E:Y.61, E:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.6: 16 residues within 4Å: Chain C: L.47, S.51, T.78, Y.81 Chain D: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.27, D:K.21, D:E.25, D:Y.61, D:L.91, D:L.113, C:Y.81, D:L.190 Hydrogen bonds: D:Y.61, D:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.7: 16 residues within 4Å: Chain B: L.47, S.51, T.78, Y.81 Chain C: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:I.27, C:K.21, C:E.25, C:Y.61, C:L.91, C:L.113, B:Y.81, C:L.190 Hydrogen bonds: C:Y.61, C:Q.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vahidi, S. et al., An allosteric switch regulatesMycobacterium tuberculosisClpP1P2 protease function as established by cryo-EM and methyl-TROSY NMR. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-03-18

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFG
ATP-dependent Clp protease proteolytic subunit 1: HIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

ATP-dependent Clp protease proteolytic subunit

ATP-dependent Clp protease proteolytic subunit 1

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