SMTL ID : 6vgn.1

ClpP1P2 complex from M. tuberculosis bound to ADEP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

7 x R0M- WFP- ALO- PRO- YCP- ALA- MP8: R0M-WFP-ALO-PRO-YCP-ALA-MP8(Non-covalent)

R0M-WFP-ALO-PRO-YCP-ALA-MP8.1: 16 residues within 4Å: Chain A: L.47, S.51, T.78, Y.81 Chain B: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 2 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:Y.81, B:K.21, B:E.25, B:I.27, B:T.59, B:Y.61, B:V.89, B:L.91, B:L.113, B:L.190 Hydrogen bonds: A:Y.81, B:Y.61, B:Y.61, B:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.2: 16 residues within 4Å: Chain A: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 Chain G: L.47, S.51, T.78, Y.81 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain G Hydrophobic interactions: A:K.21, A:E.25, A:I.27, A:T.59, A:Y.61, A:V.89, A:L.91, A:L.113, A:L.190, G:Y.81 Hydrogen bonds: A:Y.61, A:Y.61, A:Q.87, G:Y.81 R0M-WFP-ALO-PRO-YCP-ALA-MP8.3: 16 residues within 4Å: Chain F: L.47, S.51, T.78, Y.81 Chain G: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 2 interactions with chain F, 12 interactions with chain G Hydrophobic interactions: F:Y.81, G:K.21, G:E.25, G:I.27, G:T.59, G:Y.61, G:V.89, G:L.91, G:L.113, G:L.190 Hydrogen bonds: F:Y.81, G:Y.61, G:Y.61, G:Q.87 R0M-WFP-ALO-PRO-YCP-ALA-MP8.4: 16 residues within 4Å: Chain E: L.47, S.51, T.78, Y.81 Chain F: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 12 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:K.21, F:E.25, F:I.27, F:T.59, F:Y.61, F:V.89, F:L.91, F:L.113, F:L.190, E:Y.81 Hydrogen bonds: F:Y.61, F:Y.61, F:Q.87, E:Y.81 R0M-WFP-ALO-PRO-YCP-ALA-MP8.5: 16 residues within 4Å: Chain D: L.47, S.51, T.78, Y.81 Chain E: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 12 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:K.21, E:E.25, E:I.27, E:T.59, E:Y.61, E:V.89, E:L.91, E:L.113, E:L.190, D:Y.81 Hydrogen bonds: E:Y.61, E:Y.61, E:Q.87, D:Y.81 R0M-WFP-ALO-PRO-YCP-ALA-MP8.6: 16 residues within 4Å: Chain C: L.47, S.51, T.78, Y.81 Chain D: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:K.21, D:E.25, D:I.27, D:T.59, D:Y.61, D:V.89, D:L.91, D:L.113, D:L.190, C:Y.81 Hydrogen bonds: D:Y.61, D:Y.61, D:Q.87, C:Y.81 R0M-WFP-ALO-PRO-YCP-ALA-MP8.7: 16 residues within 4Å: Chain B: L.47, S.51, T.78, Y.81 Chain C: K.21, E.25, I.27, T.59, Y.61, Q.87, V.89, L.91, M.111, L.113, L.190, R.193 14 PLIP interactions: 12 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:K.21, C:E.25, C:I.27, C:T.59, C:Y.61, C:V.89, C:L.91, C:L.113, C:L.190, B:Y.81 Hydrogen bonds: C:Y.61, C:Y.61, C:Q.87, B:Y.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vahidi, S. et al., An allosteric switch regulatesMycobacterium tuberculosisClpP1P2 protease function as established by cryo-EM and methyl-TROSY NMR. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-03-18

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFG
ATP-dependent Clp protease proteolytic subunit 1: HIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

ATP-dependent Clp protease proteolytic subunit

ATP-dependent Clp protease proteolytic subunit 1

Related Entries With Identical Sequence