SMTL ID : 6vgq.1

ClpP1P2 complex from M. tuberculosis with GLF-CMK bound to ClpP1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

7 x GLY- LEU- PHE- 0QE: Z-Gly-leu-phe-CH2Cl(Non-covalent)

GLY-LEU-PHE-0QE.1: 12 residues within 4Å: Chain A: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.65, A:P.119 Hydrogen bonds: A:G.63, A:G.63, A:G.63, A:I.65, A:L.120, A:L.120 GLY-LEU-PHE-0QE.2: 12 residues within 4Å: Chain B: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.65, B:P.119 Hydrogen bonds: B:G.63, B:G.63, B:G.63, B:I.65, B:L.120, B:L.120 GLY-LEU-PHE-0QE.3: 12 residues within 4Å: Chain C: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.65, C:P.119 Hydrogen bonds: C:G.63, C:G.63, C:G.63, C:I.65, C:L.120, C:L.120 GLY-LEU-PHE-0QE.4: 12 residues within 4Å: Chain D: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:I.65, D:P.119 Hydrogen bonds: D:G.63, D:G.63, D:G.63, D:I.65, D:L.120, D:L.120 GLY-LEU-PHE-0QE.5: 12 residues within 4Å: Chain E: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:I.65, E:P.119 Hydrogen bonds: E:G.63, E:G.63, E:G.63, E:I.65, E:L.120, E:L.120 GLY-LEU-PHE-0QE.6: 12 residues within 4Å: Chain F: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:I.65, F:P.119 Hydrogen bonds: F:G.63, F:G.63, F:G.63, F:I.65, F:L.120, F:L.120 GLY-LEU-PHE-0QE.7: 12 residues within 4Å: Chain G: G.62, G.63, S.64, I.65, S.92, M.93, H.117, Q.118, P.119, L.120, M.144, N.148 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:I.65, G:P.119 Hydrogen bonds: G:G.63, G:G.63, G:G.63, G:I.65, G:L.120, G:L.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vahidi, S. et al., An allosteric switch regulatesMycobacterium tuberculosisClpP1P2 protease function as established by cryo-EM and methyl-TROSY NMR. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-03-18

Peptides

ATP-dependent Clp protease proteolytic subunit 1: ABCDEFG
ATP-dependent Clp protease proteolytic subunit: HIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

B
H

C
I

D
J

E
K

F
L

G
M

H
A

I
B

J
C

K
D

L
E

M
F

N
G

ATP-dependent Clp protease proteolytic subunit 1

ATP-dependent Clp protease proteolytic subunit

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