SMTL ID : 6vh6.1

Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

1 x QX4: 4-hydroxy-6-methyl-2H-1-benzopyran-2-one(Non-covalent)

QX4.1: 11 residues within 4Å: Chain B: K.12, I.16, S.51, N.54, L.55, L.117, V.118, K.121, P.122, T.125, I.128 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.16, B:L.55, B:L.117, B:K.121, B:T.125 Hydrogen bonds: B:N.54 Water bridges: B:K.12 Salt bridges: B:K.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messick, T.E. et al., Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANA. Molecules (2020)

Release Date

2020-05-06

Peptides

Epstein-Barr nuclear antigen 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epstein-Barr nuclear antigen 1

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