SMTL ID : 6vhh.1

Human Teneurin-2 and human Latrophilin-3 binary complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: R.953, N.955, S.966, E.968, R.988, G.991 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.988, A:G.991

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: L.1467, N.1485, S.1487, N.1488, D.1552, Q.1554 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 2 residues within 4Å: Chain A: N.1040, Q.1053 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: Y.761, N.764, I.777, D.778 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain A: C.919, N.921, T.923, R.925, H.937 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.917

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain A: T.859, N.860, S.870, L.871 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain A: N.1345 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain A: N.1141 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Alternative splicing controls teneurin-latrophilin interaction and synapse specificity by a shape-shifting mechanism. Nat Commun (2020)

Release Date

2020-06-03

Peptides

Teneurin-2: A
Adhesion G protein-coupled receptor L3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Teneurin-2

Adhesion G protein-coupled receptor L3