SMTL ID : 6vid.1 (1 other biounit)

The Crystal Structure of Aps Domain-Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F Variant of HCRBPII

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-trimer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: D.26, T.29 Chain C: K.31, L.77, D.78, N.79 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:D.26, A:T.29, A:T.29 Hydrophobic interactions: C:K.31 ACT.2: 3 residues within 4Å: Chain A: D.24, I.25, D.26 No protein-ligand interaction detected (PLIP) ACT.6: 2 residues within 4Å: Chain B: V.62, W.106 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.108

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Y.60, E.72, L.77, W.106, K.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.108, A:K.108 GOL.4: 4 residues within 4Å: Chain A: S.76, L.77 Chain B: F.38, D.40 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.76, A:S.76, B:D.40 GOL.5: 5 residues within 4Å: Chain A: F.38, D.40 Chain C: S.76, L.117, Q.128 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:D.40, C:S.76, C:S.76, C:Q.128 GOL.7: 3 residues within 4Å: Chain B: R.2, Q.44, G.46 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.47 GOL.8: 3 residues within 4Å: Chain C: M.10, L.58, N.59 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:M.10, C:N.59, C:N.59, C:D.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghanbarpour, A. et al., The Crystal Structure of Apo Domain Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F variant of HCRBPII. To Be Published

Release Date

2020-08-19

Peptides

Retinol-binding protein 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Retinol-binding protein 2

Related Entries With Identical Sequence