SMTL ID : 6vij.1

Crystal structure of mouse RABL3 in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.49, T.67 Ligands: GDP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.49, A:T.67, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain B: S.49, T.67 Ligands: GDP.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.49, B:T.67, H2O.5, H2O.5, H2O.5

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: D.43, S.44, G.45, V.46, G.47, K.48, S.49, S.50, P.64, K.177, D.179, Q.180, L.207, D.208, C.209, T.210 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.43, A:G.45, A:V.46, A:G.47, A:K.48, A:S.49, A:S.50, A:S.50, A:K.177, A:K.177, A:Q.180, A:C.209 Water bridges: A:S.50, A:T.67, A:T.67, A:T.67 Salt bridges: A:K.48, A:D.179, A:D.208 GDP.4: 16 residues within 4Å: Chain B: D.43, S.44, G.45, V.46, G.47, K.48, S.49, S.50, P.64, K.177, D.179, L.207, D.208, C.209, T.210 Ligands: MG.3 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.45, B:V.46, B:G.47, B:K.48, B:S.49, B:S.50, B:S.50, B:K.177, B:K.177, B:Q.180, B:D.208, B:C.209 Water bridges: B:K.48, B:S.49, B:S.50, B:T.67, B:T.67 Salt bridges: B:K.48, B:D.179, B:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhong, X. et al., Genetic and structural studies of RABL3 reveal an essential role in lymphoid development and function. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-04-08

Peptides

Rab-like protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Rab-like protein 3

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