SMTL ID : 6vj3.1

Carbonic Anhydrase II in complex with pyrimidine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.92, H.94, E.104, H.117, T.196 Ligands: QYA.2, GOL.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.92, A:H.94, A:H.117

1 x QYA: 2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-N-(4-sulfamoylphenyl)acetamide(Non-covalent)

QYA.2: 17 residues within 4Å: Chain A: N.65, E.67, I.89, Q.90, H.92, H.94, E.104, H.117, V.119, F.128, V.140, L.195, T.196, T.197, W.206 Ligands: ZN.1, GOL.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.89, A:V.119, A:L.195 Hydrogen bonds: A:N.65, A:E.67, A:Q.90, A:T.196, A:T.196 Water bridges: A:N.60, A:T.197 pi-Stacking: A:F.128

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 12 residues within 4Å: Chain A: W.3, Y.5, N.60, H.62, A.63, N.65, Q.90, H.92, H.94, T.197 Ligands: ZN.1, QYA.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.60, A:N.60, A:N.65, A:Q.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petreni, A. et al., Inclusion of a 5-fluorouracil moiety in nitrogenous bases derivatives as human carbonic anhydrase IX and XII inhibitors produced a targeted action against MDA-MB-231 and T47D breast cancer cells. Eur.J.Med.Chem. (2020)

Release Date

2020-03-11

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2

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