SMTL ID : 6vkg.1

Human carbonic anhydrase IX mimic with Epacadostat bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.94, H.96, E.106, H.119, T.198 Ligands: BBJ.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.96, A:H.119

1 x BBJ: N-(3-bromo-4-fluorophenyl)-N'-hydroxy-4-{[2-(sulfamoylamino)ethyl]amino}-1,2,5-oxadiazole-3-carboximidamide(Non-covalent)

BBJ.2: 16 residues within 4Å: Chain A: Q.67, L.91, Q.92, H.94, H.96, H.119, V.121, V.130, D.131, L.134, L.197, T.198, T.199, P.201, W.208 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.130, A:L.134 Hydrogen bonds: A:Q.67, A:Q.67, A:Q.92, A:T.198, A:T.198

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.112, Y.114, K.148, P.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.114 Water bridges: A:K.112, A:K.112 Salt bridges: A:K.112, A:K.148 SO4.4: 3 residues within 4Å: Chain A: H.4, W.5, D.19 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.4, A:H.4, A:W.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Angeli, A. et al., X-ray crystallography of Epacadostat in adduct with Carbonic Anhydrase IX. Bioorg.Chem. (2020)

Release Date

2020-03-04

Peptides

human carbonic anhydrase IX mimic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

human carbonic anhydrase IX mimic

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