SMTL ID : 6vlg.1 (1 other biounit)

Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 bound to GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 21 residues within 4Å: Chain A: G.187, Y.188, G.189, C.190, Y.218, H.331, R.333, K.337, A.375, T.376, D.377, I.400, A.404, R.409, G.417, V.418, D.421, S.436, S.437, Q.438, V.439 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.187, A:Y.188, A:G.189, A:C.190, A:Y.218, A:R.333, A:G.417, A:D.421, A:S.436, A:Q.438, A:V.439 Water bridges: A:R.409, A:V.418, A:V.418, A:R.441 Salt bridges: A:R.333, A:K.337, A:D.421 GDP.4: 21 residues within 4Å: Chain B: G.187, Y.188, G.189, C.190, Y.218, H.331, R.333, K.337, A.375, T.376, D.377, I.400, A.404, R.409, G.417, V.418, D.421, S.436, S.437, Q.438, V.439 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.187, B:Y.188, B:G.189, B:C.190, B:Y.218, B:G.417, B:Q.438, B:V.439 Water bridges: B:R.409, B:R.409, B:V.418, B:V.418, B:R.441 Salt bridges: B:R.333, B:K.337, B:D.421

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 7 residues within 4Å: Chain A: D.79, I.82, L.83, R.86, Y.137 Chain B: V.478, R.527 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.86

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: L.265, H.266, P.267, R.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.268 Salt bridges: A:H.266 SO4.5: 2 residues within 4Å: Chain B: H.266, P.267 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.268 Salt bridges: B:H.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jarva, M.A. et al., Structural basis of substrate recognition and catalysis by fucosyltransferase 8. J.Biol.Chem. (2020)

Release Date

2020-02-26

Peptides

Alpha-(1,6)-fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Alpha-(1,6)-fucosyltransferase

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