SMTL ID : 6voy.1

Cryo-EM structure of HTLV-1 instasome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.101, H.105, C.128, C.131 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.101, A:H.105, A:C.128, A:C.131 ZN.3: 5 residues within 4Å: Chain B: H.101, H.105, S.127, C.128, C.131 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.101, B:H.105, B:C.128, B:C.131 ZN.4: 4 residues within 4Å: Chain C: H.101, H.105, C.128, C.131 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.101, C:H.105, C:C.128, C:C.131 ZN.6: 4 residues within 4Å: Chain D: H.101, H.105, C.128, C.131 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.101, D:H.105, D:C.128, D:C.131

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.158, D.215 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.158, A:D.158, A:D.215, A:D.215 MG.5: 4 residues within 4Å: Chain C: D.158, I.159 Chain G: G.24 Chain L: G.20 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.158, C:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatt, V. et al., Structural basis of host protein hijacking in human T-cell leukemia virus integration. Nat Commun (2020)

Release Date

2020-07-01

Peptides

DNA-binding protein 7d: ABCD
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

DNA-binding protein 7d

Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform