SMTL ID : 6vp9.1

Cryo-EM structure of human NatB complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MET- ASP- VAL- PHE- MET: MDVFM peptide(Non-covalent)

MET-ASP-VAL-PHE-MET.1: 15 residues within 4Å: Chain A: L.23, T.24, E.25, Y.27, H.73, V.74, T.75, L.77, S.78, F.111, Y.137, Y.138, S.139, A.140 Ligands: CMC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.75, A:Y.138 Salt bridges: A:H.73

1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)

CMC.2: 20 residues within 4Å: Chain A: T.24, V.74, L.77, S.78, V.79, R.84, R.85, L.86, G.87, L.88, A.89, A.90, F.111, V.118, A.119, M.122, Y.123, Q.125 Chain B: E.460 Ligands: MET-ASP-VAL-PHE-MET.1 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.77, A:V.79, A:A.89 Hydrogen bonds: A:V.79, A:V.79, A:R.84, A:R.85, A:R.85, A:R.85, A:L.86, A:G.87, A:L.88, A:A.89, A:A.90, A:Q.125, B:E.460 pi-Cation interactions: A:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, S. et al., Molecular basis for N-terminal alpha-synuclein acetylation by human NatB. Elife (2020)

Release Date

2020-09-23

Peptides

N-alpha-acetyltransferase 20: A
N-alpha-acetyltransferase 25, NatB auxiliary subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-alpha-acetyltransferase 20

N-alpha-acetyltransferase 25, NatB auxiliary subunit

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