SMTL ID : 6vpc.1

Structure of the SpCas9 DNA adenine base editor - ABE8e

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: U.51 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: U.65, A.66 Chain B: T.1099 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.1099

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain E: H.85, E.87, C.115, C.118 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.85, E:C.115, E:C.118 ZN.5: 4 residues within 4Å: Chain D: X.26 Chain F: H.85, C.115, C.118 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.85, F:C.115, F:C.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lapinaite, A. et al., DNA capture by a CRISPR-Cas9-guided adenine base editor. Science (2020)

Release Date

2020-07-29

Peptides

CRISPR-associated endonuclease Cas9: B
t-RNA adenine deaminase A v8e (TadA-8e): EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

E
E

F
F

CRISPR-associated endonuclease Cas9

t-RNA adenine deaminase A v8e (TadA-8e)