SMTL ID : 6vph.1

TPX2 residues 7-20 fused to Aurora A residues 116-389 modified with cacodylate and in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.237, Q.238 Chain B: Q.80, I.156 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: K.268, H.269 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: Q.80, I.156 Chain B: Y.237, Q.238 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.268, H.269 Ligand excluded by PLIP

2 x DTD: DITHIANE DIOL(Non-covalent)

DTD.3: 8 residues within 4Å: Chain A: K.65, E.84, Q.88, L.99, L.111, L.113, D.177, W.180 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.65, A:K.65, A:K.65 DTD.11: 8 residues within 4Å: Chain B: K.65, E.84, Q.88, L.99, L.111, L.113, D.177, W.180 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.65, B:K.65, B:K.65

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.4: 20 residues within 4Å: Chain A: L.42, G.43, K.44, G.45, K.46, F.47, G.48, V.50, A.63, K.65, L.97, E.114, Y.115, A.116, L.166, F.178, G.179, W.180 Chain B: R.188 Ligands: GOL.8 16 PLIP interactions: 3 interactions with chain B, 13 interactions with chain A Hydrogen bonds: B:R.188, A:G.45, A:K.46, A:F.47, A:G.48, A:G.48, A:K.65, A:E.114, A:A.116, A:G.179, A:W.180 Water bridges: B:R.188, B:R.188, A:K.65, A:W.180 Salt bridges: A:K.65 ANP.12: 20 residues within 4Å: Chain A: R.188 Chain B: L.42, G.43, K.44, G.45, K.46, F.47, G.48, V.50, A.63, K.65, L.97, E.114, Y.115, A.116, L.166, F.178, G.179, W.180 Ligands: GOL.16 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.45, B:K.46, B:F.47, B:G.48, B:G.48, B:K.65, B:E.114, B:A.116, B:G.179, B:W.180, A:R.188 Water bridges: B:K.65, B:W.180, A:R.188, A:R.188 Salt bridges: B:K.65

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: I.38, Y.51 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.51, A:Y.51, A:R.108 GOL.6: 4 residues within 4Å: Chain A: G.258, H.283, P.284, W.285 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.258, A:G.258 GOL.7: 8 residues within 4Å: Chain A: D.159, K.161, E.163, N.164, F.178, G.179 Chain B: S.186, S.187 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.188, A:E.163 Hydrogen bonds: A:D.159, A:K.161 GOL.8: 6 residues within 4Å: Chain A: T.120, Y.122, R.123, E.163 Chain B: R.188 Ligands: ANP.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.188, A:T.120, A:T.120 Water bridges: B:R.188 GOL.13: 2 residues within 4Å: Chain B: I.38, Y.51 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.51, B:R.108 GOL.14: 4 residues within 4Å: Chain B: G.258, H.283, P.284, W.285 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.257, B:G.258, B:G.258 GOL.15: 8 residues within 4Å: Chain A: S.186, S.187 Chain B: D.159, K.161, E.163, N.164, F.178, G.179 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.159, B:K.161 Water bridges: B:E.163, A:S.187 GOL.16: 6 residues within 4Å: Chain A: R.188 Chain B: T.120, Y.122, R.123, E.163 Ligands: ANP.12 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.120, A:R.188 Water bridges: A:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, D.C. et al., Redox priming promotes Aurora A activation during mitosis. Sci.Signal. (2020)

Release Date

2020-08-05

Peptides

TPX2 fragment - Aurora A kinase domain fusion modified by cacodyate: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TPX2 fragment - Aurora A kinase domain fusion modified by cacodyate

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