SMTL ID : 6vqr.1

CryoEM Structure of the PfFNT-inhibitor complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x R7M: (2R)-2-hydroxy-7-methoxy-2-(pentafluoroethyl)-2,3-dihydro-4H-1-benzopyran-4-one(Non-covalent)

R7M.1: 13 residues within 4Å: Chain A: Y.31, F.90, A.93, F.94, I.97, I.98, L.104, T.106, G.107, V.196, V.200, V.220, H.230 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.104, A:L.104, A:V.196, A:V.200 Hydrogen bonds: A:Y.31, A:T.106, A:G.107 R7M.2: 11 residues within 4Å: Chain B: V.54, F.90, A.93, F.94, I.97, L.104, T.106, G.107, V.196, V.220, H.230 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.94, B:L.104, B:L.104, B:V.196 Hydrogen bonds: B:G.107 R7M.3: 14 residues within 4Å: Chain C: V.54, F.90, A.93, F.94, I.97, I.98, L.104, T.106, G.107, V.196, V.200, V.220, F.223, H.230 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.94, C:L.104, C:L.104, C:L.104, C:V.200 R7M.4: 11 residues within 4Å: Chain D: F.90, A.93, F.94, I.97, L.104, T.106, G.107, V.196, V.200, V.220, H.230 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.94, D:L.104, D:L.104, D:V.196, D:V.200 R7M.5: 13 residues within 4Å: Chain E: Y.31, A.93, F.94, I.97, I.98, S.102, D.103, L.104, T.106, G.107, V.196, V.220, H.230 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:F.94, E:I.97, E:L.104, E:L.104, E:T.106, E:V.196 Hydrogen bonds: E:T.106, E:G.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, M. et al., Structural basis of transport and inhibition of the Plasmodium falciparum transporter PfFNT. Embo Rep. (2021)

Release Date

2021-02-03

Peptides

Formate-nitrite transporter: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Formate-nitrite transporter

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