SMTL ID : 6vr7.1

Structure of a pseudomurein peptide ligase type C from Methanothermus fervidus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.249, H.250, F.251, F.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.250, A:F.251, A:F.252 Salt bridges: A:K.249 SO4.2: 3 residues within 4Å: Chain A: K.443, K.446, G.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.447 Salt bridges: A:K.425, A:K.443

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.257, C.260, C.279, C.281 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.257, A:C.260, A:C.279, A:C.281

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.194, L.197, S.201, F.202, K.401 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.194, A:S.201, A:F.202, A:K.401 GOL.5: 8 residues within 4Å: Chain A: G.12, G.15, T.16, V.17, A.73, P.74, S.75, L.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.15, A:T.16, A:S.75, A:S.75

1 x AAE: ACETOACETIC ACID(Non-functional Binders)

AAE.6: 7 residues within 4Å: Chain A: T.115, N.116, G.117, K.118, T.119, T.120, R.354 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.117, A:K.118, A:T.119, A:T.119, A:T.119, A:T.120, A:R.354 Salt bridges: A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subedi, B.P. et al., Archaeal pseudomurein and bacterial murein cell wall biosynthesis share a common evolutionary ancestry. FEMS Microbes (2021)

Release Date

2021-02-10

Peptides

Mur ligase middle domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mur ligase middle domain protein