SMTL ID : 6vrd.1

Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.161, R.162 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.162, A:R.162, A:R.162 Salt bridges: A:R.161 SO4.2: 2 residues within 4Å: Chain A: R.161 Chain C: A.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.161, A:R.161 Salt bridges: A:R.161 SO4.5: 3 residues within 4Å: Chain C: X.4, A.5, C.6 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.165, R.183, S.292, E.293 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.165, A:R.165, A:R.183, A:E.293 Water bridges: A:E.293, A:E.293

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain C: A.9, C.10, C.11, C.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y.-J. et al., Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level. To Be Published

Release Date

2021-02-10

Peptides

Ribonuclease H1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease H1