SMTL ID : 6vru.1

PIM-inhibitor complex 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 7 residues within 4Å: Chain A: F.98, I.101, T.102, D.138, D.202, G.206, D.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.202 pi-Stacking: A:F.98

1 x ROY: 3,4-dichloro-2-cyclopropyl-1-[(piperidin-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridine-6-carboxamide(Non-covalent)

ROY.2: 14 residues within 4Å: Chain A: L.12, F.17, V.20, A.33, K.35, L.88, E.89, R.90, V.94, D.96, E.139, L.142, I.153, D.154 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.12, A:L.88, A:V.94, A:L.142, A:L.142 Hydrogen bonds: A:K.35, A:D.154 Water bridges: A:E.139

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: H.187, G.188, R.189, S.190 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.187, A:R.189 Hydrogen bonds: A:S.190, A:S.190 Salt bridges: A:H.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barberis, C. et al., Discovery of SARxxxx92, a pan-PIM kinase inhibitor, efficacious in a KG1 tumor model. Bioorg.Med.Chem.Lett. (2020)

Release Date

2020-11-04

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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