SMTL ID : 6vso.1 (2 other biounits)

DengueV-2 Capsid Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

7 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 5 residues within 4Å: Chain A: I.59, R.63, R.66 Chain B: L.73, N.77 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.63, A:R.63, A:R.66, A:R.66, B:N.77 NO3.2: 5 residues within 4Å: Chain A: Q.20, T.43, A.44, G.45 Chain B: V.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.43, A:G.45 NO3.3: 5 residues within 4Å: Chain A: F.14, G.17, M.18, L.19 Chain B: V.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.19 NO3.4: 3 residues within 4Å: Chain A: L.25, R.49, I.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:R.49, A:K.54 NO3.5: 4 residues within 4Å: Chain A: R.13, P.24, L.27 Chain B: L.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.13 NO3.6: 4 residues within 4Å: Chain A: L.73 Chain B: I.59, R.63, R.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.63, B:R.66, B:R.66 NO3.7: 3 residues within 4Å: Chain B: R.63, R.66, K.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.66, B:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, H. et al., A cocrystal structure of dengue capsid protein in complex of inhibitor. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-15

Peptides

Capsid premembrane protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid premembrane protein

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