SMTL ID : 6vsz.1

Crystal structure of a human afucosylated IgG1 Fc expressed in tobacco plants (Nicotiana benthamiana)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG.1: 16 residues within 4Å: Chain A: F.8, F.10, P.11, P.12, K.13, D.16, E.25, T.27, V.31, D.32, Q.62, Y.63, N.64, T.66, R.68 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.10, A:K.13, A:D.16, A:D.16, A:E.25, A:E.25, A:T.27 NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG.2: 16 residues within 4Å: Chain B: F.8, F.10, P.11, P.12, K.13, D.16, E.25, T.27, V.29, V.31, D.32, Q.62, N.64, T.66, R.68 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.10, B:K.13, B:D.16, B:E.25, B:E.25, B:K.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anand, S.P. et al., Enhanced Ability of Plant-Derived PGT121 Glycovariants To Eliminate HIV-1-Infected Cells. J.Virol. (2021)

Release Date

2021-02-17

Peptides

Immunoglobulin gamma-1 heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin gamma-1 heavy chain

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