SMTL ID : 6vte.1

Naegleria gruberi RNA Ligase K170M mutant with AMP and Mn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: T.146, Q.148, T.169, V.170, M.171, L.172, S.176, E.228, F.249, V.282, V.316, K.318, K.327 Ligands: MN.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.146, A:T.146, A:T.169, A:T.169, A:L.172, A:S.176, A:K.318 Water bridges: A:Q.148, A:S.176 Salt bridges: A:K.327 pi-Stacking: A:F.249

1 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.2: 1 residues within 4Å: Ligands: AMP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unciuleac, M.C. et al., Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation. Nucleic Acids Res. (2020)

Release Date

2020-04-08

Peptides

RNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA ligase

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