SMTL ID : 6vtu.1

DH717.1 Fab monomer in complex with man9 glycan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose

MAN-MAN-MAN.1: 9 residues within 4Å: Chain A: D.34, Y.51, F.53, G.103, L.104, F.105, A.106, A.107, Y.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.104, A:A.106, A:A.107

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: L.46, E.47, W.48, N.62 Chain B: A.99, L.100, F.101 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.46, A:W.48, B:F.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, W.B. et al., Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies. Cell (2021)

Release Date

2020-12-30

Peptides

DH717.1 heavy chain: A
DH717.1 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

DH717.1 heavy chain

DH717.1 light chain