SMTL ID : 6vtx.1

Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.33, C.38, H.51, H.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.38, A:H.51, A:H.55 ZN.2: 4 residues within 4Å: Chain A: C.63, C.66, H.79, H.83 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:H.79, A:H.83 ZN.3: 4 residues within 4Å: Chain A: C.3, C.8, H.21, H.25 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.3, A:C.8, A:H.21, A:H.25, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: S.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.15, A:S.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, R. et al., Liquid condensation of reprogramming factor KLF4 with DNA provides a mechanism for chromatin organization. Nat Commun (2021)

Release Date

2021-09-01

Peptides

Krueppel-like factor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Krueppel-like factor 4