SMTL ID : 6vuj.1

Crystal structure of BRD4 bromodomain 1 with N-methylpyrrolidin-2-one (NMP) derivative 15c (N,N-diethyl-3',4'-dimethoxy-6-(1-methyl-5-oxopyrrolidin-3-yl)-[1,1'-biphenyl]-3-sulfonamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 2 residues within 4Å: Chain A: R.26, K.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.26, A:K.30 Water bridges: A:R.26

1 x RLY: N,N-diethyl-3',4'-dimethoxy-6-[(3S)-1-methyl-5-oxopyrrolidin-3-yl][1,1'-biphenyl]-3-sulfonamide(Non-covalent)

RLY.2: 17 residues within 4Å: Chain A: W.39, P.40, F.41, Q.43, P.44, V.45, D.46, L.50, L.52, Y.55, N.93, C.94, Y.97, N.98, D.103, I.104, M.107 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.39, A:W.39, A:W.39, A:P.40, A:F.41, A:Q.43, A:V.45, A:L.50, A:L.50, A:I.104, A:I.104 Hydrogen bonds: A:Q.43, A:D.46, A:N.98 Water bridges: A:C.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilton-Proctor, J.P. et al., Substituted 1-methyl-4-phenylpyrrolidin-2-ones - Fragment-based design of N-methylpyrrolidone-derived bromodomain inhibitors. Eur.J.Med.Chem. (2020)

Release Date

2020-02-26

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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