SMTL ID : 6vuo.1

Reverse Transcriptase Diabody with S82bC/R83T Mutation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: G.145, D.146, R.147, S.205, S.206, L.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.206, A:S.206, A:S.206 Water bridges: A:R.147 EDO.2: 5 residues within 4Å: Chain A: Y.161, Y.220, S.221 Chain B: V.106, S.109 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.106, B:S.109 EDO.3: 7 residues within 4Å: Chain A: D.130, P.224, T.226 Chain B: W.50, A.63, D.64, S.65 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.64, B:D.64 Water bridges: B:D.64, B:S.65 EDO.4: 9 residues within 4Å: Chain A: Q.166, K.168, L.176, G.186, V.187, P.188, R.190, F.191, D.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.166 Water bridges: A:K.168, A:K.168, A:E.210 EDO.5: 3 residues within 4Å: Chain A: V.187, P.188, S.189 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.189, A:S.189 EDO.6: 7 residues within 4Å: Chain A: T.214, Y.216, Q.229, G.230 Chain B: G.45, K.46, G.47 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.45, A:Y.216, A:Q.229 Water bridges: B:G.47, B:G.47 EDO.7: 6 residues within 4Å: Chain A: S.194, R.195, S.196, D.199, F.200, T.201 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.196, A:S.196, A:D.199 EDO.8: 8 residues within 4Å: Chain B: Q.166, K.168, K.174, L.176, V.187, P.188, R.190, F.191 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.166 Water bridges: B:Q.166, B:R.190 EDO.9: 8 residues within 4Å: Chain B: A.154, D.157, I.158, S.159, R.195, G.197, T.198, F.200 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.158 EDO.10: 3 residues within 4Å: Chain B: D.146, R.147, V.148 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.147 Water bridges: B:R.147 EDO.11: 4 residues within 4Å: Chain B: S.139, L.140, S.141, E.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.140, B:S.141 EDO.12: 6 residues within 4Å: Chain A: C.87 Chain B: G.68, R.69, T.71, N.86, C.87 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.71, B:T.71, B:N.86 EDO.13: 3 residues within 4Å: Chain B: S.189, R.190, S.205 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.205 Water bridges: B:S.205 EDO.14: 2 residues within 4Å: Chain B: T.76, S.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chesterman, C. et al., Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure (2021)

Release Date

2021-02-17

Peptides

Single-chain Fv: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Single-chain Fv