SMTL ID : 6vuq.1 (3 other biounits)

Crystal structure of CHIKV nsP3 macrodomain soaked with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 23 residues within 4Å: Chain A: M.17, D.18, I.19, A.30, A.31, N.32, G.38, D.39, G.40, V.41, C.42, A.44, L.116, L.117, S.118, T.119, G.120, V.121, Y.122, Y.150, C.151, R.152, W.156 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.18, A:D.18, A:I.19, A:N.32, A:N.32, A:V.41, A:S.118, A:T.119, A:T.119, A:G.120, A:V.121, A:Y.122, A:R.152 Water bridges: A:D.39, A:C.42, A:C.42, A:A.44, A:L.116, A:Y.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Pyrimidone inhibitors targeting Chikungunya Virus nsP3 macrodomain by fragment-based drug design. Plos One (2021)

Release Date

2021-01-13

Peptides

Nonstructural polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nonstructural polyprotein

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