- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ROG: 2-({[(3S)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.3: 8 residues within 4Å:- Chain A: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.10: 8 residues within 4Å:- Chain A: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.7, NA.9
Ligand excluded by PLIPSO4.16: 6 residues within 4Å:- Chain B: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.17: 8 residues within 4Å:- Chain B: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.24: 8 residues within 4Å:- Chain B: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.21, NA.23
Ligand excluded by PLIPSO4.30: 6 residues within 4Å:- Chain C: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.31: 8 residues within 4Å:- Chain C: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.38: 8 residues within 4Å:- Chain C: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.35, NA.37
Ligand excluded by PLIPSO4.44: 6 residues within 4Å:- Chain D: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.45: 8 residues within 4Å:- Chain D: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.52: 8 residues within 4Å:- Chain D: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.49, NA.51
Ligand excluded by PLIPSO4.58: 6 residues within 4Å:- Chain E: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.59: 8 residues within 4Å:- Chain E: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.66: 8 residues within 4Å:- Chain E: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.63, NA.65
Ligand excluded by PLIPSO4.72: 6 residues within 4Å:- Chain F: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPSO4.73: 8 residues within 4Å:- Chain F: P.92, G.93, R.328, G.329, Y.330, A.331, A.411, D.413
Ligand excluded by PLIPSO4.80: 8 residues within 4Å:- Chain F: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.77, NA.79
Ligand excluded by PLIP- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.5: 9 residues within 4Å:- Chain A: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.13: 5 residues within 4Å:- Chain A: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain B: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.19: 9 residues within 4Å:- Chain B: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain B: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIPGOL.32: 4 residues within 4Å:- Chain C: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.33: 9 residues within 4Å:- Chain C: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.41: 5 residues within 4Å:- Chain C: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIPGOL.46: 4 residues within 4Å:- Chain D: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.47: 9 residues within 4Å:- Chain D: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.55: 5 residues within 4Å:- Chain D: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIPGOL.60: 4 residues within 4Å:- Chain E: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.61: 9 residues within 4Å:- Chain E: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.69: 5 residues within 4Å:- Chain E: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIPGOL.74: 4 residues within 4Å:- Chain F: H.125, R.317, M.319, R.373
Ligand excluded by PLIPGOL.75: 9 residues within 4Å:- Chain F: F.44, S.103, F.104, V.105, L.138, H.139, A.140, S.141, Y.146
Ligand excluded by PLIPGOL.83: 5 residues within 4Å:- Chain F: P.61, T.62, Y.84, S.131, Y.133
Ligand excluded by PLIP- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 6 residues within 4Å:- Chain A: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.62
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.156, A:T.156
- Water bridges: A:T.156, A:Q.292, A:V.416
PEG.7: 10 residues within 4Å:- Chain A: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.288, A:T.289
PEG.20: 6 residues within 4Å:- Chain B: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.48
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.156, B:T.156
- Water bridges: B:T.156, B:Q.292, B:V.416
PEG.21: 10 residues within 4Å:- Chain B: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.24
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.288, B:T.289
PEG.34: 6 residues within 4Å:- Chain C: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.76
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.156, C:T.156
- Water bridges: C:T.156, C:Q.292, C:V.416
PEG.35: 10 residues within 4Å:- Chain C: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.38
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.288, C:T.289
PEG.48: 6 residues within 4Å:- Chain D: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.20
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.156
- Water bridges: D:T.156, D:T.156, D:Q.292, D:V.416
PEG.49: 10 residues within 4Å:- Chain D: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.52
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:I.288
PEG.62: 6 residues within 4Å:- Chain E: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.6
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:T.156
- Water bridges: E:T.156, E:T.156, E:Q.292, E:V.416
PEG.63: 10 residues within 4Å:- Chain E: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.66
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:I.288
PEG.76: 6 residues within 4Å:- Chain F: T.156, P.291, Q.292, A.383, V.416
- Ligands: PEG.34
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:T.156
- Water bridges: F:T.156, F:T.156, F:Q.292, F:V.416
PEG.77: 10 residues within 4Å:- Chain F: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: SO4.80
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:I.288
- 12 x NA: SODIUM ION(Non-functional Binders)
NA.8: 7 residues within 4Å:- Chain A: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.379, A:L.381, A:G.382, A:A.383
NA.9: 6 residues within 4Å:- Chain A: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.156, A:T.418, A:T.418
- Water bridges: A:T.156
NA.22: 7 residues within 4Å:- Chain B: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.154, B:L.381, B:G.382, B:A.383
NA.23: 6 residues within 4Å:- Chain B: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.24
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.289, B:T.418, B:T.418
- Water bridges: B:T.156
NA.36: 7 residues within 4Å:- Chain C: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.378, C:L.381, C:G.382, C:A.383
NA.37: 6 residues within 4Å:- Chain C: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.38
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.156, C:T.418, C:T.418
- Water bridges: C:T.156
NA.50: 7 residues within 4Å:- Chain D: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:L.379, D:L.381, D:G.382, D:A.383
NA.51: 6 residues within 4Å:- Chain D: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.52
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.418, D:T.418
- Water bridges: D:T.156
NA.64: 7 residues within 4Å:- Chain E: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:L.379, E:L.381, E:G.382, E:A.383
NA.65: 6 residues within 4Å:- Chain E: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.66
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.418, E:T.418
- Water bridges: E:T.156
NA.78: 7 residues within 4Å:- Chain F: A.154, S.378, L.379, Y.380, L.381, G.382, A.383
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:L.379, F:L.381, F:G.382, F:A.383
NA.79: 6 residues within 4Å:- Chain F: T.156, T.289, H.290, Q.417, T.418
- Ligands: SO4.80
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:T.156, F:T.418
- Water bridges: F:T.156
- 18 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 8 residues within 4Å:- Chain A: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.12: 7 residues within 4Å:- Chain A: H.170, D.172, A.173, H.297, L.298
- Chain E: A.392, R.394
Ligand excluded by PLIPCL.14: 4 residues within 4Å:- Chain A: G.115, L.116, L.117, R.118
Ligand excluded by PLIPCL.25: 8 residues within 4Å:- Chain B: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.26: 7 residues within 4Å:- Chain B: H.170, D.172, A.173, H.297, L.298
- Chain D: A.392, R.394
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain B: G.115, L.116, L.117, R.118
Ligand excluded by PLIPCL.39: 8 residues within 4Å:- Chain C: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.40: 7 residues within 4Å:- Chain C: H.170, D.172, A.173, H.297, L.298
- Chain F: A.392, R.394
Ligand excluded by PLIPCL.42: 4 residues within 4Å:- Chain C: G.115, L.116, L.117, R.118
Ligand excluded by PLIPCL.53: 8 residues within 4Å:- Chain D: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.54: 7 residues within 4Å:- Chain B: A.392, R.394
- Chain D: H.170, D.172, A.173, H.297, L.298
Ligand excluded by PLIPCL.56: 4 residues within 4Å:- Chain D: G.115, L.116, L.117, R.118
Ligand excluded by PLIPCL.67: 8 residues within 4Å:- Chain E: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.68: 7 residues within 4Å:- Chain A: A.392, R.394
- Chain E: H.170, D.172, A.173, H.297, L.298
Ligand excluded by PLIPCL.70: 4 residues within 4Å:- Chain E: G.115, L.116, L.117, R.118
Ligand excluded by PLIPCL.81: 8 residues within 4Å:- Chain F: R.88, L.89, T.90, V.96, R.203, G.209, L.210, L.211
Ligand excluded by PLIPCL.82: 7 residues within 4Å:- Chain C: A.392, R.394
- Chain F: H.170, D.172, A.173, H.297, L.298
Ligand excluded by PLIPCL.84: 4 residues within 4Å:- Chain F: G.115, L.116, L.117, R.118
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ROG: 2-({[(3S)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
- 18 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A