- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RNJ: (7S)-7-methyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-7,8-dihydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 10 residues within 4Å:- Chain A: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.288, A:T.289, A:H.290
PEG.7: 7 residues within 4Å:- Chain A: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.93, A:S.412
PEG.10: 10 residues within 4Å:- Chain B: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.288, B:T.289, B:H.290
PEG.15: 7 residues within 4Å:- Chain B: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.93, B:S.412
PEG.18: 10 residues within 4Å:- Chain C: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.21
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.288, C:T.289, C:H.290
PEG.23: 7 residues within 4Å:- Chain C: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.22
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.93, C:S.412
PEG.26: 10 residues within 4Å:- Chain D: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.29
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.288, D:H.290
PEG.31: 7 residues within 4Å:- Chain D: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.30
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.93, D:S.412
PEG.34: 10 residues within 4Å:- Chain E: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.37
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:I.288, E:H.290
PEG.39: 7 residues within 4Å:- Chain E: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.38
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.93, E:S.412
PEG.42: 10 residues within 4Å:- Chain F: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
- Ligands: DMS.45
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:I.288, F:H.290
PEG.47: 7 residues within 4Å:- Chain F: P.92, G.93, E.94, S.412, D.413, V.414
- Ligands: DMS.46
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:G.93, F:S.412
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: P.61, Y.84, S.131, Y.133
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.84, A:Y.133, A:Y.133
GOL.11: 4 residues within 4Å:- Chain B: P.61, Y.84, S.131, Y.133
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.84, B:Y.133, B:Y.133
GOL.19: 4 residues within 4Å:- Chain C: P.61, Y.84, S.131, Y.133
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.84, C:Y.133, C:Y.133
GOL.27: 4 residues within 4Å:- Chain D: P.61, Y.84, S.131, Y.133
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.133
GOL.35: 4 residues within 4Å:- Chain E: P.61, Y.84, S.131, Y.133
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Y.133
GOL.43: 4 residues within 4Å:- Chain F: P.61, Y.84, S.131, Y.133
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:Y.133
- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 4 residues within 4Å:- Chain A: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.5: 7 residues within 4Å:- Chain A: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.2
Ligand excluded by PLIPDMS.6: 7 residues within 4Å:- Chain A: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.7
Ligand excluded by PLIPDMS.8: 2 residues within 4Å:- Chain A: E.159, W.309
Ligand excluded by PLIPDMS.12: 4 residues within 4Å:- Chain B: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.13: 7 residues within 4Å:- Chain B: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.10
Ligand excluded by PLIPDMS.14: 7 residues within 4Å:- Chain B: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.15
Ligand excluded by PLIPDMS.16: 2 residues within 4Å:- Chain B: E.159, W.309
Ligand excluded by PLIPDMS.20: 4 residues within 4Å:- Chain C: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.21: 7 residues within 4Å:- Chain C: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.18
Ligand excluded by PLIPDMS.22: 7 residues within 4Å:- Chain C: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.23
Ligand excluded by PLIPDMS.24: 2 residues within 4Å:- Chain C: E.159, W.309
Ligand excluded by PLIPDMS.28: 4 residues within 4Å:- Chain D: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.29: 7 residues within 4Å:- Chain D: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.26
Ligand excluded by PLIPDMS.30: 7 residues within 4Å:- Chain D: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.31
Ligand excluded by PLIPDMS.32: 2 residues within 4Å:- Chain D: E.159, W.309
Ligand excluded by PLIPDMS.36: 4 residues within 4Å:- Chain E: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.37: 7 residues within 4Å:- Chain E: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.34
Ligand excluded by PLIPDMS.38: 7 residues within 4Å:- Chain E: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.39
Ligand excluded by PLIPDMS.40: 2 residues within 4Å:- Chain E: E.159, W.309
Ligand excluded by PLIPDMS.44: 4 residues within 4Å:- Chain F: W.33, R.57, V.60, T.62
Ligand excluded by PLIPDMS.45: 7 residues within 4Å:- Chain F: R.262, I.288, T.289, H.290, Q.417, T.418
- Ligands: PEG.42
Ligand excluded by PLIPDMS.46: 7 residues within 4Å:- Chain F: P.92, G.329, Y.330, A.411, S.412, D.413
- Ligands: PEG.47
Ligand excluded by PLIPDMS.48: 2 residues within 4Å:- Chain F: E.159, W.309
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RNJ: (7S)-7-methyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-7,8-dihydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A