- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RN4: (7S)-7-phenyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 8 residues within 4Å:- Chain A: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.261, A:R.262, A:I.288, A:T.289
PEG.3: 3 residues within 4Å:- Chain A: T.58, P.61, D.86
No protein-ligand interaction detected (PLIP)PEG.15: 8 residues within 4Å:- Chain B: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.261, B:R.262, B:I.288, B:T.289
PEG.16: 3 residues within 4Å:- Chain B: T.58, P.61, D.86
No protein-ligand interaction detected (PLIP)PEG.28: 8 residues within 4Å:- Chain C: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:L.261, C:R.262, C:I.288, C:T.289
PEG.29: 3 residues within 4Å:- Chain C: T.58, P.61, D.86
No protein-ligand interaction detected (PLIP)PEG.41: 8 residues within 4Å:- Chain D: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:L.261, D:R.262, D:I.288
- Water bridges: D:T.289
PEG.42: 3 residues within 4Å:- Chain D: T.58, P.61, D.86
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.86
PEG.54: 8 residues within 4Å:- Chain E: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:L.261, E:R.262, E:I.288
- Water bridges: E:T.289
PEG.55: 3 residues within 4Å:- Chain E: T.58, P.61, D.86
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:D.86
PEG.67: 8 residues within 4Å:- Chain F: L.261, R.262, H.269, I.287, I.288, T.289, H.290, Q.417
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:L.261, F:R.262, F:I.288
- Water bridges: F:T.289
PEG.68: 3 residues within 4Å:- Chain F: T.58, P.61, D.86
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:D.86
- 18 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 6 residues within 4Å:- Chain A: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.5: 4 residues within 4Å:- Chain A: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.6: 3 residues within 4Å:- Chain A: W.33, R.57, V.60
Ligand excluded by PLIPDMS.17: 6 residues within 4Å:- Chain B: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.18: 4 residues within 4Å:- Chain B: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.19: 3 residues within 4Å:- Chain B: W.33, R.57, V.60
Ligand excluded by PLIPDMS.30: 6 residues within 4Å:- Chain C: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.31: 4 residues within 4Å:- Chain C: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.32: 3 residues within 4Å:- Chain C: W.33, R.57, V.60
Ligand excluded by PLIPDMS.43: 6 residues within 4Å:- Chain D: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.44: 4 residues within 4Å:- Chain D: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.45: 3 residues within 4Å:- Chain D: W.33, R.57, V.60
Ligand excluded by PLIPDMS.56: 6 residues within 4Å:- Chain E: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.57: 4 residues within 4Å:- Chain E: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.58: 3 residues within 4Å:- Chain E: W.33, R.57, V.60
Ligand excluded by PLIPDMS.69: 6 residues within 4Å:- Chain F: A.367, E.368, E.370, R.396, T.397, K.398
Ligand excluded by PLIPDMS.70: 4 residues within 4Å:- Chain F: I.288, T.418, A.419, E.421
Ligand excluded by PLIPDMS.71: 3 residues within 4Å:- Chain F: W.33, R.57, V.60
Ligand excluded by PLIP- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 7 residues within 4Å:- Chain A: E.159, T.161, L.255, R.257, R.284, S.286, T.308
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.257, A:R.257, A:R.284, A:S.286, A:S.286
- Water bridges: A:E.159, A:T.308
GOL.8: 6 residues within 4Å:- Chain A: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.212
GOL.20: 7 residues within 4Å:- Chain B: E.159, T.161, L.255, R.257, R.284, S.286, T.308
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.257, B:R.257, B:R.284, B:S.286, B:S.286
- Water bridges: B:E.159, B:T.308
GOL.21: 6 residues within 4Å:- Chain B: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.212
GOL.33: 7 residues within 4Å:- Chain C: E.159, T.161, L.255, R.257, R.284, S.286, T.308
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:R.257, C:R.257, C:R.284, C:S.286, C:S.286
- Water bridges: C:E.159, C:T.308
GOL.34: 6 residues within 4Å:- Chain C: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.212
GOL.46: 7 residues within 4Å:- Chain D: E.159, T.161, L.255, R.257, R.284, S.286, T.308
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:T.161, D:R.257, D:R.257, D:R.284, D:S.286, D:S.286
- Water bridges: D:E.159, D:T.308
GOL.47: 6 residues within 4Å:- Chain D: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.212
GOL.59: 7 residues within 4Å:- Chain E: E.159, T.161, L.255, R.257, R.284, S.286, T.308
8 PLIP interactions:8 interactions with chain E- Hydrogen bonds: E:T.161, E:R.257, E:R.257, E:R.284, E:S.286, E:S.286
- Water bridges: E:E.159, E:T.308
GOL.60: 6 residues within 4Å:- Chain E: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:R.212
GOL.72: 7 residues within 4Å:- Chain F: E.159, T.161, L.255, R.257, R.284, S.286, T.308
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:T.161, F:R.257, F:R.257, F:R.284, F:S.286, F:S.286
- Water bridges: F:E.159, F:T.308
GOL.73: 6 residues within 4Å:- Chain F: W.56, R.212, L.216, E.219, E.223, F.420
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:R.212
- 24 x NA: SODIUM ION(Non-functional Binders)
NA.9: 4 residues within 4Å:- Chain A: G.143, W.315
- Chain E: T.300, T.302
Ligand excluded by PLIPNA.10: 4 residues within 4Å:- Chain A: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.11: 4 residues within 4Å:- Chain A: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.12: 5 residues within 4Å:- Chain A: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIPNA.22: 4 residues within 4Å:- Chain B: G.143, W.315
- Chain D: T.300, T.302
Ligand excluded by PLIPNA.23: 4 residues within 4Å:- Chain B: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.24: 4 residues within 4Å:- Chain B: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.25: 5 residues within 4Å:- Chain B: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIPNA.35: 4 residues within 4Å:- Chain C: G.143, W.315
- Chain F: T.300, T.302
Ligand excluded by PLIPNA.36: 4 residues within 4Å:- Chain C: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.37: 4 residues within 4Å:- Chain C: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.38: 5 residues within 4Å:- Chain C: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIPNA.48: 4 residues within 4Å:- Chain B: T.300, T.302
- Chain D: G.143, W.315
Ligand excluded by PLIPNA.49: 4 residues within 4Å:- Chain D: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.50: 4 residues within 4Å:- Chain D: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.51: 5 residues within 4Å:- Chain D: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIPNA.61: 4 residues within 4Å:- Chain A: T.300, T.302
- Chain E: G.143, W.315
Ligand excluded by PLIPNA.62: 4 residues within 4Å:- Chain E: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.63: 4 residues within 4Å:- Chain E: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.64: 5 residues within 4Å:- Chain E: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIPNA.74: 4 residues within 4Å:- Chain C: T.300, T.302
- Chain F: G.143, W.315
Ligand excluded by PLIPNA.75: 4 residues within 4Å:- Chain F: S.234, Y.246, R.247, S.259
Ligand excluded by PLIPNA.76: 4 residues within 4Å:- Chain F: G.335, E.336, F.337, R.405
Ligand excluded by PLIPNA.77: 5 residues within 4Å:- Chain F: R.187, P.188, E.233, S.234, F.235
Ligand excluded by PLIP- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.13: 8 residues within 4Å:- Chain A: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:A.154, A:S.378
MG.26: 8 residues within 4Å:- Chain B: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:A.154, B:S.378
MG.39: 8 residues within 4Å:- Chain C: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:A.154, C:S.378
MG.52: 8 residues within 4Å:- Chain D: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:A.154, D:S.378
MG.65: 8 residues within 4Å:- Chain E: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:A.154, E:S.378
MG.78: 8 residues within 4Å:- Chain F: A.154, G.377, S.378, L.379, Y.380, L.381, G.382, A.383
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:A.154, F:S.378
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RN4: (7S)-7-phenyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 18 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 24 x NA: SODIUM ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A