- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RMG: 2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: E.196, A.197, E.200, R.212, Q.214
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.212, A:Q.214
- Water bridges: A:E.200
PEG.9: 5 residues within 4Å:- Chain B: E.196, A.197, E.200, R.212, Q.214
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.212, B:Q.214
- Water bridges: B:E.200
PEG.16: 5 residues within 4Å:- Chain C: E.196, A.197, E.200, R.212, Q.214
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.212, C:Q.214
- Water bridges: C:E.200
PEG.23: 5 residues within 4Å:- Chain D: E.196, A.197, E.200, R.212, Q.214
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.212, D:Q.214
PEG.30: 5 residues within 4Å:- Chain E: E.196, A.197, E.200, R.212, Q.214
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.212, E:Q.214
PEG.37: 5 residues within 4Å:- Chain F: E.196, A.197, E.200, R.212, Q.214
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:R.212, F:Q.214
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.125, A:R.317, A:R.317, A:M.319
GOL.10: 6 residues within 4Å:- Chain B: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.125, B:R.317, B:R.317, B:M.319
GOL.17: 6 residues within 4Å:- Chain C: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.125, C:R.317, C:R.317, C:M.319
GOL.24: 6 residues within 4Å:- Chain D: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:H.125, D:R.317, D:R.317, D:M.319
GOL.31: 6 residues within 4Å:- Chain E: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:H.125, E:R.317, E:R.317, E:M.319
GOL.38: 6 residues within 4Å:- Chain F: H.125, R.126, A.129, R.317, M.319, R.373
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:H.125, F:R.317, F:R.317, F:M.319
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 6 residues within 4Å:- Chain A: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.57, A:V.60
- Water bridges: A:D.63, A:A.65, A:A.65
SO4.11: 6 residues within 4Å:- Chain B: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.57, B:V.60
- Water bridges: B:D.63, B:A.65, B:A.65
SO4.18: 6 residues within 4Å:- Chain C: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.57, C:V.60
- Water bridges: C:D.63, C:A.65, C:A.65
SO4.25: 6 residues within 4Å:- Chain D: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.57, D:V.60
- Water bridges: D:D.63, D:A.65, D:A.65
SO4.32: 6 residues within 4Å:- Chain E: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:R.57, E:V.60
- Water bridges: E:D.63, E:A.65, E:A.65
SO4.39: 6 residues within 4Å:- Chain F: W.33, R.57, V.60, P.61, T.62, A.65
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:R.57, F:V.60
- Water bridges: F:D.63, F:A.65, F:A.65
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.5: 7 residues within 4Å:- Chain A: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)DMS.12: 7 residues within 4Å:- Chain B: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)DMS.19: 7 residues within 4Å:- Chain C: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)DMS.26: 7 residues within 4Å:- Chain D: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)DMS.33: 7 residues within 4Å:- Chain E: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)DMS.40: 7 residues within 4Å:- Chain F: G.93, R.328, Y.330, A.331, A.411, S.412, D.413
No protein-ligand interaction detected (PLIP)- 6 x NA: SODIUM ION(Non-functional Binders)
NA.6: 7 residues within 4Å:- Chain A: A.392, R.394
- Chain E: H.170, D.172, A.173, H.297, L.298
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:H.297
NA.13: 7 residues within 4Å:- Chain B: A.392, R.394
- Chain D: H.170, D.172, A.173, H.297, L.298
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.392
NA.20: 7 residues within 4Å:- Chain C: A.392, R.394
- Chain F: H.170, D.172, A.173, H.297, L.298
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.392
NA.27: 7 residues within 4Å:- Chain B: H.170, D.172, A.173, H.297, L.298
- Chain D: A.392, R.394
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.297
NA.34: 7 residues within 4Å:- Chain A: H.170, D.172, A.173, H.297, L.298
- Chain E: A.392, R.394
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.297
NA.41: 7 residues within 4Å:- Chain C: H.170, D.172, A.173, H.297, L.298
- Chain F: A.392, R.394
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.297
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 2 residues within 4Å:- Chain A: T.289, T.418
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain B: T.289, T.418
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain C: T.289, T.418
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain D: T.289, T.418
Ligand excluded by PLIPCL.35: 2 residues within 4Å:- Chain E: T.289, T.418
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain F: T.289, T.418
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RMG: 2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-4-amine(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A