- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RM7: 2-[(4-amino-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide(Non-covalent)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 6 residues within 4Å:- Chain A: A.367, E.368, E.370, R.396, T.397, K.398
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.370
- Salt bridges: A:E.370
DMS.9: 6 residues within 4Å:- Chain B: A.367, E.368, E.370, R.396, T.397, K.398
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.370
- Salt bridges: B:E.370
DMS.16: 6 residues within 4Å:- Chain C: A.367, E.368, E.370, R.396, T.397, K.398
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.370
- Salt bridges: C:E.370
DMS.23: 6 residues within 4Å:- Chain D: A.367, E.368, E.370, R.396, T.397, K.398
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:E.370
DMS.30: 6 residues within 4Å:- Chain E: A.367, E.368, E.370, R.396, T.397, K.398
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:E.370
DMS.37: 6 residues within 4Å:- Chain F: A.367, E.368, E.370, R.396, T.397, K.398
1 PLIP interactions:1 interactions with chain F- Salt bridges: F:E.370
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 5 residues within 4Å:- Chain A: A.197, E.200, R.212, P.213, Q.214
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.212, A:Q.214
- Water bridges: A:A.197, A:E.200, A:E.200, A:R.201
PEG.4: 9 residues within 4Å:- Chain A: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.52, A:S.52, A:R.212, A:E.219
PEG.10: 5 residues within 4Å:- Chain B: A.197, E.200, R.212, P.213, Q.214
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.212, B:Q.214
- Water bridges: B:A.197, B:E.200, B:E.200, B:R.201
PEG.11: 9 residues within 4Å:- Chain B: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.8
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.52, B:S.52, B:R.212, B:E.219
PEG.17: 5 residues within 4Å:- Chain C: A.197, E.200, R.212, P.213, Q.214
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.212, C:Q.214
- Water bridges: C:A.197, C:E.200, C:E.200, C:R.201
PEG.18: 9 residues within 4Å:- Chain C: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.15
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.52, C:S.52, C:R.212, C:E.219
PEG.24: 5 residues within 4Å:- Chain D: A.197, E.200, R.212, P.213, Q.214
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.212, D:Q.214
- Water bridges: D:A.197, D:E.200, D:R.201
PEG.25: 9 residues within 4Å:- Chain D: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.22
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.52, D:S.52, D:R.212
PEG.31: 5 residues within 4Å:- Chain E: A.197, E.200, R.212, P.213, Q.214
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:R.212, E:Q.214
- Water bridges: E:A.197, E:E.200, E:R.201
PEG.32: 9 residues within 4Å:- Chain E: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.29
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:S.52, E:S.52, E:R.212
PEG.38: 5 residues within 4Å:- Chain F: A.197, E.200, R.212, P.213, Q.214
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:R.212, F:Q.214
- Water bridges: F:A.197, F:E.200, F:R.201
PEG.39: 9 residues within 4Å:- Chain F: I.48, S.52, W.56, R.212, L.216, E.219, L.220, E.223
- Ligands: RM7.36
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:S.52, F:S.52, F:R.212
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 8 residues within 4Å:- Chain A: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.93, A:A.411, A:D.413
SO4.12: 8 residues within 4Å:- Chain B: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.93, B:A.411, B:D.413
SO4.19: 8 residues within 4Å:- Chain C: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.93, C:A.411, C:D.413
SO4.26: 8 residues within 4Å:- Chain D: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.93, D:A.411, D:D.413
- Water bridges: D:H.332
SO4.33: 8 residues within 4Å:- Chain E: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:G.93, E:A.411, E:D.413
- Water bridges: E:H.332
SO4.40: 8 residues within 4Å:- Chain F: P.92, G.93, G.329, Y.330, A.331, A.411, S.412, D.413
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.93, F:A.411, F:D.413
- Water bridges: F:H.332
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.7: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.13: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.20: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.21: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.27: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.28: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.34: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.35: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.41: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.42: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RM7: 2-[(4-amino-6,7,8,9-tetrahydro-5H-cyclohepta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide(Non-covalent)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punetha, A. et al., Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis. Acs Chem.Biol. (2020)
- Release Date
- 2020-06-03
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A