SMTL ID : 6vv8.2 (2 other biounits)

Mycobacterium tuberculosis dihydrofolate reductase in complex with JEB285

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: W.8, A.9, I.16, G.17, R.18, G.20, D.21, I.22, G.45, R.46, R.47, T.48, S.51, L.67, S.68, R.69, Q.70, G.82, I.96, G.97, G.98, G.99, Q.100, V.101, Y.102, A.128 Ligands: RPV.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:A.9, A:A.9, A:R.18, A:G.20, A:R.46, A:R.46, A:R.47, A:R.47, A:R.47, A:T.48, A:T.48, A:S.51, A:S.68, A:R.69, A:R.69, A:Q.70, A:Q.70, A:G.98, A:G.99, A:Q.100, A:V.101, A:Y.102 Salt bridges: A:R.46 pi-Cation interactions: A:R.69, A:R.69

1 x RPV: 5-{[3-(1H-indol-3-yl)propanoyl]amino}-1-phenyl-1H-pyrazole-4-carboxylic acid(Non-covalent)

RPV.2: 9 residues within 4Å: Chain A: R.25, Q.30, F.33, P.53, V.56, L.59, R.62, I.96 Ligands: NAP.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.30, A:P.53, A:V.56, A:L.59, A:I.96 Hydrogen bonds: A:Q.30, A:R.34 Salt bridges: A:R.62 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ribeiro, J.A. et al., Using a Fragment-Based Approach to Identify Alternative Chemical Scaffolds Targeting Dihydrofolate Reductase fromMycobacterium tuberculosis. Acs Infect Dis. (2020)

Release Date

2020-07-15

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dihydrofolate reductase

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