- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GMP: GUANOSINE(Non-covalent)
GMP.2: 23 residues within 4Å:- Chain A: D.43, Q.44, L.46, D.48, S.68, G.95, G.96, T.97, I.98, N.100, C.155, T.157, F.167, I.169, M.174, T.196, Y.198, L.199, R.201, N.357, G.358, D.361, P.417
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:Q.44, A:Q.44, A:D.48, A:G.96, A:T.97, A:N.100, A:R.201, A:D.361
- Water bridges: A:Q.44, A:R.201, A:N.357
- Salt bridges: A:D.43
- pi-Stacking: A:Y.198, A:Y.198
GMP.3: 8 residues within 4Å:- Chain A: L.278, D.279, W.280, V.281, D.282, F.298, H.330, R.338
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:L.278, A:V.281, A:R.338
- pi-Stacking: A:H.330, A:H.330
- pi-Cation interactions: A:H.330
GMP.9: 23 residues within 4Å:- Chain B: D.43, Q.44, L.46, D.48, S.68, G.95, G.96, T.97, I.98, N.100, C.155, T.157, F.167, I.169, M.174, T.196, Y.198, L.199, R.201, N.357, G.358, D.361, P.417
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:Q.44, B:Q.44, B:D.48, B:G.96, B:T.97, B:N.100, B:R.201
- Water bridges: B:Q.44, B:R.201, B:N.357
- Salt bridges: B:D.43
- pi-Stacking: B:Y.198, B:Y.198
GMP.10: 8 residues within 4Å:- Chain B: L.278, D.279, W.280, V.281, D.282, F.298, H.330, R.338
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:L.278, B:V.281, B:R.338
- pi-Stacking: B:H.330, B:H.330
- pi-Cation interactions: B:H.330
- 6 x K: POTASSIUM ION(Non-covalent)
K.4: 7 residues within 4Å:- Chain A: L.133, C.134, T.136
- Chain B: L.133, C.134, T.136
- Ligands: K.11
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:L.133, B:C.134, B:T.136, A:L.133, A:C.134, A:T.136
K.5: 5 residues within 4Å:- Chain A: L.230, G.231, T.232, M.256, E.260
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:L.230, A:E.260, H2O.1, H2O.7, H2O.7
K.6: 7 residues within 4Å:- Chain A: N.355, N.357, V.411, Q.414, H.415, S.416, P.417
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.355, A:N.357, A:V.411, A:Q.414, A:S.416
K.11: 7 residues within 4Å:- Chain A: L.133, C.134, T.136
- Chain B: L.133, C.134, T.136
- Ligands: K.4
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:L.133, B:C.134, B:T.136, A:L.133, A:C.134, A:T.136
K.12: 5 residues within 4Å:- Chain B: L.230, G.231, T.232, M.256, E.260
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:L.230, B:E.260, H2O.9, H2O.15, H2O.15
K.13: 7 residues within 4Å:- Chain B: N.355, N.357, V.411, Q.414, H.415, S.416, P.417
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.355, B:N.357, B:V.411, B:Q.414, B:S.416
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, B. et al., ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation. Mol.Cell (2020)
- Release Date
- 2020-10-07
- Peptides
- Inosine-guanosine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GMP: GUANOSINE(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, B. et al., ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation. Mol.Cell (2020)
- Release Date
- 2020-10-07
- Peptides
- Inosine-guanosine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A