SMTL ID : 6vxk.1

Cryo-EM Structure of the full-length A39R/PlexinC1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.42 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain B: N.107 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain B: W.206, N.207, Q.303 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain B: S.112, N.115 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain B: N.218, T.220, S.221 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain B: Q.49, N.52, P.56 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain B: L.680, N.681, T.683, H.684 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain B: N.737, Y.766, Y.771, L.775 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain B: F.726, N.837, S.839 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain C: N.42 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain D: N.107 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain D: W.206, N.207, Q.303 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain D: S.112, N.115 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain D: N.218, T.220, S.221 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain D: Q.49, N.52, P.56 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain D: L.680, N.681, T.683, H.684 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain D: N.737, Y.766, Y.771, L.775 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain D: F.726, N.837, S.839 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuo, Y.C. et al., Cryo-EM structure of the PlexinC1/A39R complex reveals inter-domain interactions critical for ligand-induced activation. Nat Commun (2020)

Release Date

2020-04-29

Peptides

Semaphorin-like protein 139: AC
Plexin-C1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Semaphorin-like protein 139

Plexin-C1