SMTL ID : 6vy5.1

Crystal structure of Nipah receptor binding protein head domain in complex with human neutralizing antibody HENV-26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: N.196, S.198 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.198 NAG.2: 3 residues within 4Å: Chain C: V.118, N.124, Y.127 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.124 NAG.3: 5 residues within 4Å: Chain C: T.179, Y.181, K.233, N.235, S.237 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:T.179 Hydrogen bonds: C:T.179, C:K.233, C:N.235 NAG.4: 4 residues within 4Å: Chain C: N.296, W.297, R.298, N.299 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.296, C:N.296, C:W.297 NAG.5: 5 residues within 4Å: Chain B: S.92, S.93, S.94, D.95 Chain C: N.347 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Potent Henipavirus Neutralization by Antibodies Recognizing Diverse Sites on Hendra and Nipah Virus Receptor Binding Protein. Cell (2020)

Release Date

2021-01-06

Peptides

Anti-Hendra receptor binding protein antibody HENV-26 Fab heavy chain: A
Anti-Hendra receptor binding protein antibody HENV-26 Fab light chain: B
receptor binding protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

Anti-Hendra receptor binding protein antibody HENV-26 Fab heavy chain

Anti-Hendra receptor binding protein antibody HENV-26 Fab light chain

receptor binding protein

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