- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QRP: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione(Non-covalent)
- 4 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Covalent)
DST.2: 13 residues within 4Å:- Chain A: E.128, R.142, K.232, Y.234, F.288, K.302, Y.304, I.374, K.389, Y.391, W.444, Y.460
- Ligands: QRP.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.304, A:I.374
- Hydrogen bonds: A:R.142, A:Y.460
- Salt bridges: A:R.142, A:K.232, A:K.302, A:K.389
DST.4: 13 residues within 4Å:- Chain B: E.128, R.142, K.232, Y.234, F.288, K.302, Y.304, I.374, K.389, Y.391, W.444, Y.460
- Ligands: QRP.3
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:Y.304, B:I.374, B:Y.391, B:Y.391
- Hydrogen bonds: B:R.142, B:Y.234, B:Y.304, B:Y.391
- Salt bridges: B:R.142, B:K.232, B:K.302, B:K.389
DST.6: 13 residues within 4Å:- Chain C: E.128, R.142, K.232, Y.234, F.288, K.302, Y.304, I.374, K.389, Y.391, W.444, Y.460
- Ligands: QRP.5
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:Y.304, C:I.374
- Hydrogen bonds: C:R.142, C:Y.460
- Salt bridges: C:R.142, C:K.232, C:K.302, C:K.389
DST.8: 13 residues within 4Å:- Chain D: E.128, R.142, K.232, Y.234, F.288, K.302, Y.304, I.374, K.389, Y.391, W.444, Y.460
- Ligands: QRP.7
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:Y.304, D:I.374, D:Y.391
- Hydrogen bonds: D:Y.234, D:Y.304, D:Y.391
- Salt bridges: D:R.142, D:K.232, D:K.302, D:K.389
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kelly, S.P. et al., Data Science-Driven Analysis of Substrate-Permissive Diketopiperazine Reverse Prenyltransferase NotF: Applications in Protein Engineering and Cascade Biocatalytic Synthesis of (-)-Eurotiumin A. J.Am.Chem.Soc. (2022)
- Release Date
- 2021-02-03
- Peptides
- Deoxybrevianamide E synthase notF: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
ED
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QRP: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione(Non-covalent)
- 4 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kelly, S.P. et al., Data Science-Driven Analysis of Substrate-Permissive Diketopiperazine Reverse Prenyltransferase NotF: Applications in Protein Engineering and Cascade Biocatalytic Synthesis of (-)-Eurotiumin A. J.Am.Chem.Soc. (2022)
- Release Date
- 2021-02-03
- Peptides
- Deoxybrevianamide E synthase notF: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
ED
G