SMTL ID : 6vyj.1

Human UHRF1 TTD domain in complex with a fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

2 x RVV: 2,4-dimethylpyridine(Non-covalent)

RVV.1: 9 residues within 4Å: Chain A: D.23, W.32, F.33, E.34, R.88, A.89, M.105, W.119, F.159 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.32, A:W.119 Hydrogen bonds: A:A.89 pi-Stacking: A:W.119 RVV.2: 7 residues within 4Å: Chain A: D.26, M.29, F.33, Y.69, Y.72, N.75, F.118 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.33, A:Y.69, A:Y.72, A:Y.72, A:F.118 Water bridges: A:N.75 pi-Stacking: A:F.33, A:Y.72

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.3: 6 residues within 4Å: Chain A: T.27, N.28, N.75, V.77, V.78, Q.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.79 Water bridges: A:T.27, A:T.27, A:N.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, L. et al., Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery. Sci Rep (2021)

Release Date

2021-01-27

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UHRF1

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