SMTL ID : 6vzm.2 (1 other biounit)

Crystal structure of human PPARgamma ligand binding domain Y473E mutant in complex with Darglitazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x GEV: (5Z)-5-({4-[3-(5-methyl-2-phenyl-1,3-oxazol-4-yl)propanoyl]phenyl}methylidene)-1,3-thiazolidine-2,4-dione(Non-covalent)

GEV.1: 18 residues within 4Å: Chain A: I.47, L.53, E.57, F.62, H.64, R.78, I.79, G.82, C.83, R.86, A.90, I.124, M.127, L.128, L.131, I.139, M.146, M.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.79, A:A.90, A:M.127, A:L.128, A:L.131, A:I.139 Hydrogen bonds: A:E.57 pi-Stacking: A:F.62 pi-Cation interactions: A:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure (2021)

Release Date

2021-03-03

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor gamma

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