SMTL ID : 6w00.1

Crystal structure of Fab239 in complex with NPNA2 peptide from circumsporozoite protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACE- ASN- PRO- ASN- ALA- ASN- PRO- ASN- ALA: NPNA2 peptide(Non-covalent)

ACE-ASN-PRO-ASN-ALA-ASN-PRO-ASN-ALA.1: 24 residues within 4Å: Chain B: H.90, Y.91, N.92, S.93, Y.94, S.95, R.96, I.97 Chain C: R.30, N.31, F.32, G.33, H.35, W.47, V.50, I.51, W.52, H.53, F.59, D.99, G.101, G.102, A.103, R.106 18 PLIP interactions: 13 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:W.52, C:F.59, C:R.106, B:Y.94 Hydrogen bonds: C:N.31, C:G.33, C:H.53, C:D.99, C:D.99, C:G.101, C:R.106, C:R.106, B:N.92, B:S.93, B:Y.94 Water bridges: C:W.52, C:A.103, B:I.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pholcharee, T. et al., Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum. Nat Commun (2021)

Release Date

2020-07-29

Peptides

Immunoglobulin G-binding protein G: A
Fab239 light chain: B
Fab239 heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
L

C
H

Immunoglobulin G-binding protein G

Fab239 light chain

Fab239 heavy chain

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