SMTL ID : 6w0m.1

Human 8-oxoguanine glycosylase crosslinked with oxoG lesion containing DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: R.6, L.14, T.68, V.69, S.78, R.79, P.80 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.14, A:S.78 MG.2: 5 residues within 4Å: Chain A: C.233, I.234, L.235, V.238 Chain B: C.10 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.233, A:L.235, A:V.238, H2O.4

1 x S5Y: 2-(2-ethoxyethoxy)ethanethiol(Non-covalent)

S5Y.3: 7 residues within 4Å: Chain A: Y.195, C.199, G.237 Chain B: G.8, T.9, C.10 Chain C: C.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shigdel, U.K. et al., The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase. Nat Commun (2020)

Release Date

2020-09-23

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase