SMTL ID : 6w1h.1

Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Pseudomonas putida

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 6 residues within 4Å: Chain A: H.70, A.72, H.226, T.228, E.294 Ligands: OOG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.70, A:H.226, A:E.294, H2O.1

1 x OOG: 2-OXOADIPIC ACID(Non-covalent)

OOG.2: 16 residues within 4Å: Chain A: H.70, A.72, R.74, F.129, S.131, H.226, E.294, F.399, L.400, P.401, V.402, S.403, A.404, I.407, F.408 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.72, A:F.129, A:F.408 Hydrogen bonds: A:V.402 Salt bridges: A:H.70, A:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, M.G. et al., An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism. Nat Commun (2020)

Release Date

2020-06-24

Peptides

Hydroxyglutarate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyglutarate synthase

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