SMTL ID : 6w26.1 (1 other biounit)

Terpenoid Cyclase FgGS in Complex with Mg, Inorganic Pyrophosphate, and Imidazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.199, R.262 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.199, A:R.262

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.94, E.98, R.216, R.300 Ligands: MG.3, POP.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.94, A:E.98, H2O.2, H2O.3 MG.3: 5 residues within 4Å: Chain A: D.94, E.98, D.168 Ligands: MG.2, POP.6 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.94, A:E.98, H2O.1, H2O.1, H2O.3 MG.4: 5 residues within 4Å: Chain A: R.165, N.209, S.213, E.217 Ligands: POP.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.213, A:E.217, H2O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: E.98, S.224, T.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.224

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.6: 15 residues within 4Å: Chain A: F.91, D.94, E.98, R.165, T.169, N.209, S.213, R.216, E.217, R.300, Y.301 Ligands: MG.2, MG.3, MG.4, IMD.7 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.169, A:N.209, A:S.213 Water bridges: A:R.165, A:R.165, A:R.165, A:R.216, A:R.216, A:R.300 Salt bridges: A:R.165, A:R.216, A:R.300

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 8 residues within 4Å: Chain A: F.67, F.91, T.169, N.209, N.291, Y.301 Ligands: POP.6, GOL.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.169 IMD.8: 6 residues within 4Å: Chain A: K.151, N.152, V.153, D.154, T.225, L.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.154 Water bridges: A:F.155

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 2 residues within 4Å: Chain A: T.146, D.150 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.163 EDO.10: 3 residues within 4Å: Chain A: A.23, Q.253, R.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.253

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: F.91, D.94, T.169 Ligands: IMD.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, H. et al., Discovery of the cryptic function of terpene cyclases as aromatic prenyltransferases. Nat Commun (2020)

Release Date

2020-07-08

Peptides

Terpenoid cyclase FgGS: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Terpenoid cyclase FgGS

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