SMTL ID : 6w2o.1

Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: F.153, F.216 Ligands: CL.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.83 EDO.2: 3 residues within 4Å: Chain A: A.174, R.175, A.178 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: N.182, H.183, P.184, Q.185, A.186 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.183, A:Q.185, A:Q.185, A:A.186 Water bridges: A:H.183, A:H.183, A:R.189 Salt bridges: A:H.183 SO4.4: 3 residues within 4Å: Chain A: S.170, K.171, D.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.170, A:K.171, A:D.172 Water bridges: A:A.174 SO4.5: 1 residues within 4Å: Chain A: R.24 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.24, A:R.24 Salt bridges: A:R.24 SO4.6: 2 residues within 4Å: Chain A: R.36, H.341 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.36, A:H.341 Salt bridges: A:R.36, A:H.341

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: R.36, G.39, R.40 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: W.33, M.35, R.36, I.82 Ligands: EDO.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia. To Be Published

Release Date

2020-04-22

Peptides

Uroporphyrinogen decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uroporphyrinogen decarboxylase