SMTL ID : 6w3e.1

Structure of phosphorylated IRE1 in complex with G-0701

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-dimer

Ligands

2 x SJV: methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate(Non-covalent)

SJV.1: 22 residues within 4Å: Chain A: L.31, G.32, V.40, A.51, K.53, A.63, E.66, V.67, I.94, I.96, E.97, L.98, C.99, A.100, A.101, T.102, E.105, H.146, N.147, L.149, S.164, D.165 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.40, A:A.51, A:I.96 Hydrogen bonds: A:E.66, A:C.99, A:C.99, A:E.105 pi-Cation interactions: A:K.53, A:K.53 SJV.2: 23 residues within 4Å: Chain B: L.31, G.32, V.40, A.51, K.53, A.63, E.66, V.67, L.70, I.94, I.96, E.97, L.98, C.99, A.100, A.101, T.102, E.105, H.146, N.147, L.149, S.164, D.165 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.51, B:K.53, B:I.96, B:D.165 Hydrogen bonds: B:E.66, B:C.99, B:C.99, B:E.105 pi-Cation interactions: B:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferri, E. et al., Activation of the IRE1 RNase through remodeling of the kinase front pocket by ATP-competitive ligands. Nat Commun (2020)

Release Date

2020-12-09

Peptides

Serine/threonine-protein kinase/endoribonuclease IRE1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase/endoribonuclease IRE1

Related Entries With Identical Sequence