SMTL ID : 6w4z.1 (1 other biounit)

Galectin-8N terminal domain in complex with Methyl 3-O-[3-O-benzyloxy]-malonyl-beta-D-galactopyranoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x SZS: methyl 3-O-[3-(benzyloxy)-3-oxopropanoyl]-beta-D-galactopyranoside(Non-covalent)

SZS.1: 10 residues within 4Å: Chain A: R.44, Q.46, R.58, H.64, N.66, R.68, N.78, W.85, E.88, Y.140 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.58 Hydrogen bonds: A:R.44, A:R.44, A:Q.46, A:R.68, A:N.78 Water bridges: A:R.68, A:R.68 Salt bridges: A:R.44, A:R.44, A:R.58, A:R.58, A:R.68 pi-Stacking: A:Y.140 pi-Cation interactions: A:R.58

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.6, N.9, I.10, F.150 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: E.89, G.126, R.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.126, A:R.128, A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, B. et al., Rational Design and Synthesis of Methyl-beta-d-galactomalonyl Phenyl Esters as Potent Galectin-8 N Antagonists. J.Med.Chem. (2020)

Release Date

2020-09-02

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

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