SMTL ID : 6w5e.1

Class D beta-lactamase BSU-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 8 residues within 4Å: Chain A: Q.75, S.76, S.124, I.126, K.214, T.215, G.216, T.217 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.76, A:S.76, A:S.124, A:T.217, A:T.217, A:T.217 Water bridges: A:T.215, A:T.217, A:T.217 Salt bridges: A:K.214, A:K.214 MLI.2: 5 residues within 4Å: Chain A: R.67, R.218, G.223, L.224, D.245 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.67, A:R.218 MLI.3: 2 residues within 4Å: Chain A: S.166, S.167 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: R.122 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: K.198, Y.212, K.232, S.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.198, A:S.237, A:S.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, N.K. et al., A surface loop modulates activity of the Bacillus class D beta-lactamases. J.Struct.Biol. (2020)

Release Date

2020-06-24

Peptides

BSU-2 beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BSU-2 beta-lactamase