SMTL ID : 6w5h.3 (3 other biounits)

1.85 A resolution structure of Norovirus 3CL protease in complex with inhibitor 5d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x TKP: 2-(3-chlorophenyl)-2-methylpropyl [(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate(Covalent)

TKP.1: 17 residues within 4Å: Chain A: H.36, E.60, I.115, Q.116, R.118, V.120, T.140, I.141, P.142, C.145, H.163, A.164, A.165, A.166, T.167, K.168, V.174 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:E.60, A:I.115, A:I.115, A:Q.116, A:R.118, A:R.118, A:V.120 Hydrogen bonds: A:Q.116, A:T.140, A:T.140, A:A.164, A:A.166 Water bridges: A:G.143, A:C.145 pi-Stacking: A:H.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rathnayake, A.D. et al., Structure-Guided Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease. J.Med.Chem. (2020)

Release Date

2020-09-30

Peptides

3C-LIKE PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

3C-LIKE PROTEASE

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