SMTL ID : 6w5l.2 (3 other biounits)

2.1 A resolution structure of Norovirus 3CL protease in complex with inhibitor 7g

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x T0D: (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide(Covalent)

T0D.1: 13 residues within 4Å: Chain A: H.37, I.116, Q.117, T.141, I.142, P.143, C.146, H.164, A.165, A.166, A.167, K.169, V.175 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.116, A:I.116 Hydrogen bonds: A:Q.117, A:T.141, A:T.141, A:A.165, A:A.167 Water bridges: A:T.141, A:G.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rathnayake, A.D. et al., Structure-Guided Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease. J.Med.Chem. (2020)

Release Date

2020-09-30

Peptides

3C-LIKE PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

3C-LIKE PROTEASE

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