SMTL ID : 6w7z.1

RNF12 RING domain in complex with Ube2d2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: P.70, K.71, V.72, S.88, I.89, R.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.70, A:V.72, A:I.89, A:I.89, A:R.95, A:R.95

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.63, H.65, C.82, C.85 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.63, B:H.65, B:C.82, B:C.85 ZN.3: 4 residues within 4Å: Chain B: C.45, C.48, H.68, C.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.45, B:C.48, B:H.68, B:C.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Middleton, A.J. et al., The RING Domain of RING Finger 12 Efficiently Builds Degradative Ubiquitin Chains. J.Mol.Biol. (2020)

Release Date

2020-05-20

Peptides

Ubiquitin-conjugating enzyme E2 D2: A
E3 ubiquitin-protein ligase RLIM: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 D2

E3 ubiquitin-protein ligase RLIM